View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_30 (Length: 250)
Name: NF13055_low_30
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 30952274 - 30952035
Alignment:
| Q |
1 |
actccaaactaaaactatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttccccaatggaacaattacattgaaaga |
100 |
Q |
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| T |
30952274 |
actccaaactaaacctatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttcccctatggaacaattacattgaaaga |
30952175 |
T |
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| Q |
101 |
ggattatgtacgtaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaattttggagaag |
200 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30952174 |
ggattatgtatggaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaattttggagaag |
30952075 |
T |
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| Q |
201 |
cttcaacaaacttggaatcaacctccctagccctcctatg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
30952074 |
cttcaacaaacttggaatcaacctccctagccctcctatg |
30952035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 30946369 - 30946189
Alignment:
| Q |
1 |
actccaaactaaaactatttcctaaaaaattaaattcaagatggtttagaccttttgtgatttctcaagtcttccccaatggaacaattacattgaaaga |
100 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||| |
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| T |
30946369 |
actccaaactaaagctatttcctagaaaattaaattcaagatggtttagaccttt--------cttaagtcttctccaatggaacaattacattgacaga |
30946278 |
T |
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| Q |
101 |
ggattatgtacgtaaattcaaggtgaacgccagagagtcaagcactacttgattctggataacataaccaacaatagaaggtcgataaa |
189 |
Q |
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| T |
30946277 |
ggattatgtatggaaattcaagttgaacgccaaagagtcaagcactacttgattctggataacataactaacaatagaaggtcgataaa |
30946189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 26280191 - 26280268
Alignment:
| Q |
163 |
cataaccaacaatagaaggtcgataaattttggagaagcttcaacaaacttggaatcaacctccctagccctcctatg |
240 |
Q |
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|||||| ||||| ||||||| ||| ||| ||| |||| |||| ||| |||||||||| |||||||||||||||||| |
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| T |
26280191 |
cataactaacaagagaaggttgatgaatgttgacaaagcatcaaaaaatttggaatcaagctccctagccctcctatg |
26280268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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