View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_31 (Length: 245)
Name: NF13055_low_31
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 19761997 - 19762082
Alignment:
| Q |
142 |
cttcgttcaattttaatggaagaggaagaaggtatcatcagtcaattgccggatgaactgttacaccggattctctcctccctgtt |
227 |
Q |
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| T |
19761997 |
cttcgttcaattttaatggaagaggaagaaggtatcattagtcaattgccggatgaactgttacaccagattctctcctccctgtt |
19762082 |
T |
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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 19761810 - 19761883
Alignment:
| Q |
15 |
tctttccctcccaaaatataaaacgaacatac---ccaccaccacctattcaaaacaaacaacagaaagagaaa |
85 |
Q |
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| T |
19761810 |
tctttccctcccaaaatataaaacgaatatacccaccaccaccacctattcaaaacaaacaacagaaagagaaa |
19761883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 19761900 - 19761941
Alignment:
| Q |
103 |
ctctcattcttgctttctttaatctttaatcttggagctctt |
144 |
Q |
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| T |
19761900 |
ctctcattcttgctttccttaatctttaatcttggagctctt |
19761941 |
T |
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