View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13055_low_4 (Length: 681)

Name: NF13055_low_4
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13055_low_4
NF13055_low_4
[»] chr6 (4 HSPs)
chr6 (339-664)||(4387160-4387487)
chr6 (19-293)||(4386861-4387118)
chr6 (457-580)||(4375137-4375259)
chr6 (614-664)||(4375265-4375317)
[»] chr4 (4 HSPs)
chr4 (14-65)||(3786293-3786344)
chr4 (22-62)||(33090201-33090241)
chr4 (19-62)||(34113118-34113161)
chr4 (19-62)||(38811000-38811043)
[»] chr7 (2 HSPs)
chr7 (19-62)||(26639648-26639691)
chr7 (19-62)||(22328185-22328229)
[»] chr3 (2 HSPs)
chr3 (19-62)||(1683804-1683847)
chr3 (21-59)||(5270705-5270743)
[»] chr1 (3 HSPs)
chr1 (19-62)||(41136144-41136187)
chr1 (22-62)||(12318318-12318358)
chr1 (19-62)||(22079633-22079676)
[»] chr8 (3 HSPs)
chr8 (19-61)||(15691121-15691163)
chr8 (21-62)||(10240445-10240486)
chr8 (21-57)||(20684851-20684887)
[»] chr5 (2 HSPs)
chr5 (14-62)||(4160915-4160963)
chr5 (19-54)||(317096-317131)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-138; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 339 - 664
Target Start/End: Original strand, 4387160 - 4387487
Alignment:
Q  339 caactattttcataccatattttctacctcattttttacccattaaatgaagnnnnnnnnttatacaaatgtggatgcaggggaagaaatcaaggtggca 438  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||     
T  4387160 caactattttcataccatattttctacctcattttttacccattaaatgaa-aaaaaaaattatacaaatgtggatgcaggggaagaaatcaaggtggcg 4387258  T
Q  439 acatgannnnnnngccaaattgtagtttttgccaaaatcatggtaatcctgccacaattccgtcaaactaaccaccaatccaaacatgcacgttagataa 538  Q
    ||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4387259 acatgatttttttgccaaattgtagtttatgccaaaatcatggtaatcctgccacaattccgtcaaactaaccaccaatccaaacatgcacgttagatag 4387358  T
Q  539 aagaatttatactactagattctattacaacagtattta---tactagcatgaaactgtaaataacagcaagtccaatagagttatatcaagtgttgtcc 635  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4387359 aagaatttatactactagattctattacaacagtatttatactactagcatgaaactgtaaataacagcaagtccaatagagttatatcaagtgttgtcc 4387458  T
Q  636 tgataggaattcagtttcatcttagtaac 664  Q
    |||||||||||||||||||||||||||||    
T  4387459 tgataggaattcagtttcatcttagtaac 4387487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 4386861 - 4387118
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcacaaaaaccctttattggatcatcactaaactataaacaagagacggacacaaatttact 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4386861 tctaaatttcattgatgtgagatttggagttaccaaattcacaaaaaccctttattggatcatcactaaactataaacaagagacggaaacaaatttact 4386960  T
Q  119 taaacagagagaaacctatgggataagagaagcataagattaaacaagtgattagaggtttaaaccttatcatttatttatgatagccaaggtatgaaac 218  Q
    ||||||||||||||||||||||||||||||||||||                 ||||||||| | ||| |||||||||||||||||||||||||||||||    
T  4386961 taaacagagagaaacctatgggataagagaagcata-----------------agaggtttacatcttttcatttatttatgatagccaaggtatgaaac 4387043  T
Q  219 aaacatatttgaaaggaaacaacaacaaattctccaacgaagtgttaatcactgctcaaggcatacatcaaacct 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4387044 aaacatatttgaaaggaaacaacaacaaattctccaacgaagtgttaatcaccgctcaaggcatacatcaaacct 4387118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 457 - 580
Target Start/End: Original strand, 4375137 - 4375259
Alignment:
Q  457 attgtagtttttgccaaaatcatggtaatcctgccacaattccgtcaaactaaccaccaatccaaacatgcacgttagataaaagaatttatactactag 556  Q
    |||||||||||||||||||||| | | ||| ||||   ||||||||||||||||||||||||| ||||||||  ||||||| ||| ||||||||||||||    
T  4375137 attgtagtttttgccaaaatcacgatgatc-tgccgagattccgtcaaactaaccaccaatccgaacatgcatcttagatagaagtatttatactactag 4375235  T
Q  557 attctattacaacagtatttatac 580  Q
     |||||||||||||||| ||||||    
T  4375236 cttctattacaacagtaattatac 4375259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 614 - 664
Target Start/End: Original strand, 4375265 - 4375317
Alignment:
Q  614 agagttatatcaa--gtgttgtcctgataggaattcagtttcatcttagtaac 664  Q
    |||||||||||||  ||| | ||||||||||||||||| ||||||||||||||    
T  4375265 agagttatatcaaaagtggtatcctgataggaattcagcttcatcttagtaac 4375317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 3786293 - 3786344
Alignment:
Q  14 ataattctaaatttcattgatgtgagatttggagttaccaaattcacaaaaa 65  Q
    |||| ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  3786293 ataaatctaaatttcattgatgtgagatatggagttaccgaattcacaaaaa 3786344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 33090201 - 33090241
Alignment:
Q  22 aaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  33090201 aaatttcattgatgtgagatttggagttaccgaattcacaa 33090241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 34113118 - 34113161
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    |||||||||||||||| ||||| || ||||||||||||||||||    
T  34113118 tctaaatttcattgatatgagaattagagttaccaaattcacaa 34113161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 38811043 - 38811000
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    |||||||||||||| | ||||||||| |||||||||||||||||    
T  38811043 tctaaatttcattggtttgagatttgaagttaccaaattcacaa 38811000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 26639648 - 26639691
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    ||||||||| |||||||||||||||||||||||| |||||||||    
T  26639648 tctaaattttattgatgtgagatttggagttaccgaattcacaa 26639691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 22328229 - 22328185
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagtt-accaaattcacaa 62  Q
    |||||||||||||||||||||||||||| || ||| |||||||||    
T  22328229 tctaaatttcattgatgtgagatttggaattgaccgaattcacaa 22328185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 1683804 - 1683847
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  1683804 tctaaatttcattgatgtgagatttagagttaccgaattcacaa 1683847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 5270705 - 5270743
Alignment:
Q  21 taaatttcattgatgtgagatttggagttaccaaattca 59  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  5270705 taaatttcattgatgtgagattttgagttaccgaattca 5270743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 41136144 - 41136187
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    |||||||||||||||||||||||||||||||||| |||| ||||    
T  41136144 tctaaatttcattgatgtgagatttggagttaccgaatttacaa 41136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 12318358 - 12318318
Alignment:
Q  22 aaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  12318358 aaatttcattgatgtgagatttggagctaccgaattcacaa 12318318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 22079633 - 22079676
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    |||||||||||||||| |||||||||||||| || |||||||||    
T  22079633 tctaaatttcattgatatgagatttggagtttccgaattcacaa 22079676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 15691121 - 15691163
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaaattcaca 61  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  15691121 tctaaatttcattgatgtgaggtttggagttaccgaattcaca 15691163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 10240445 - 10240486
Alignment:
Q  21 taaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    |||||| ||||||||||| ||||||||||||| |||||||||    
T  10240445 taaattacattgatgtgaaatttggagttaccgaattcacaa 10240486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 21 - 57
Target Start/End: Complemental strand, 20684887 - 20684851
Alignment:
Q  21 taaatttcattgatgtgagatttggagttaccaaatt 57  Q
    |||| |||||||||||||||||| |||||||||||||    
T  20684887 taaacttcattgatgtgagattttgagttaccaaatt 20684851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 4160915 - 4160963
Alignment:
Q  14 ataattctaaatttcattgatgtgagatttggagttaccaaattcacaa 62  Q
    |||| ||||||||  ||||||||||||||||||||||||||||| ||||    
T  4160915 ataaatctaaattatattgatgtgagatttggagttaccaaatttacaa 4160963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 317096 - 317131
Alignment:
Q  19 tctaaatttcattgatgtgagatttggagttaccaa 54  Q
    ||||||||||||||||||||||||||||||| ||||    
T  317096 tctaaatttcattgatgtgagatttggagtttccaa 317131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University