View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13055_low_5 (Length: 603)
Name: NF13055_low_5
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 12 - 585
Target Start/End: Original strand, 45082760 - 45083335
Alignment:
| Q |
12 |
cagagacaatgtagttgtcttcaatcagaacatttgtagatgaatctgtataaaagaaagagtggtaaaacaagtagttattattttagtcctttttatt |
111 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
45082760 |
cagaaacaatgtagttgtcttcaatcagaacatttgtagatgaatctgtatgaaagaaagagtgggaaaacaagtagttattattttagtccttgttatt |
45082859 |
T |
|
| Q |
112 |
gaaccttttattcaatatgaatatgaatgccataagttccatagagttggttcatatataca--ttacctgggtctatgccatctgtgtttggaacgtcc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45082860 |
gaaccttttattcaatatgaatatgaatgccataagttccatagagttggttcatatatacacattacctgggtctatgccatctgtgtttggaacgtcc |
45082959 |
T |
|
| Q |
210 |
actggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcagaagaatgaaataacacacacatatagaaaataatgctt |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45082960 |
actggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcagaagaatgaaataacacacacatatagaaaataatgctt |
45083059 |
T |
|
| Q |
310 |
taaataaagttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattgaccaaagtgagatttgatat |
409 |
Q |
| |
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|||||||||||||||||||| ||||| | ||||| |||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45083060 |
taaataaagttgagaaatttaaaaattgtgactcgtcaaacctgctgtaaactggatgtacaaaccaagaaggggaattgaccaaagtgagatttgatat |
45083159 |
T |
|
| Q |
410 |
ttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgacccttgtggaacttctcccaccaagtagatccttgtccatca |
509 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||| |
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| T |
45083160 |
ttggatttgatcagaatacataatctcaatcatatatggcctagtgattttcaattgtttcttttggaacttgtcccaccaagtagatccttgtccatca |
45083259 |
T |
|
| Q |
510 |
attgtcccattgttaccttatgaacaaatttcaatagatcaaattttaatataacattaacacattttaataatgg |
585 |
Q |
| |
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|||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45083260 |
attgtcccattgttaccttatgtagaaaattcaatagatcaaattttaatataacattaacacattttaataatgg |
45083335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 174 - 585
Target Start/End: Original strand, 45075500 - 45075905
Alignment:
| Q |
174 |
ttacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaaga-------tataaagttta |
266 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
45075500 |
ttacctgggtctatgccatccgtgttaggaatgtcgactggtgcaagaattgtaagtccatttataattatgttactgaagaatgaagatataaagttta |
45075599 |
T |
|
| Q |
267 |
atcagaagaatgaaataacacacacatatagaaaataatgctttaaataaagttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggat |
366 |
Q |
| |
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||||| ||| ||||||| | | || || ||||| |||| ||||| ||||||||| |||| |||| ||||||||||||||||| ||||| |
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| T |
45075600 |
gtcagatgaacgaaataatatatactta--gaaaa-----------ataaggttgaaaaatttgaagatggtgactaatcaaacctgctgtaaactggat |
45075686 |
T |
|
| Q |
367 |
ggacaaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttg |
466 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45075687 |
ggacaaaccaagaaggggaattgatcaaagtgagattggatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttg |
45075786 |
T |
|
| Q |
467 |
acccttgtggaacttctcccaccaagtagatccttgtccatcaattgtcccattgttaccttatgaacaaatttcaatagatcaaattttaatataacat |
566 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
45075787 |
tcccttgtggaacttgtcccaccaataagatccttgtccatcaattgtcccattgttaccttatgaacaaaattcaatagatcaaattttaatataagct |
45075886 |
T |
|
| Q |
567 |
taacacattttaataatgg |
585 |
Q |
| |
|
| ||| ||||||||||||| |
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|
| T |
45075887 |
tgacaaattttaataatgg |
45075905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 318 - 559
Target Start/End: Original strand, 45068021 - 45068262
Alignment:
| Q |
318 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaaaaaggggaattgaccaaagtgagatttgatatttggattt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||| |
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|
| T |
45068021 |
gttgagaaatttgaaaatggcgactcatcaaacctgctgtaaattggatggacaaaccaattaggagagttgatcaaagtgagatttgatatttggattt |
45068120 |
T |
|
| Q |
418 |
gatcagaatacataatctcaatcatgtatggcctagtgattttcatttgacccttgtggaacttctcccaccaagtagatccttgtccatcaattgtccc |
517 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
45068121 |
gatcagaatacataatctcaatcatatatggcctagtgattttcaattgtttcttttggaacttgtcccaccaagtagatccttgtccatcaattgtccc |
45068220 |
T |
|
| Q |
518 |
attgttaccttatgaacaaatttcaatagatcaaattttaat |
559 |
Q |
| |
|
|||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
45068221 |
attgttaccttatgtagaaaattcaatagatcaaattttaat |
45068262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 344 - 533
Target Start/End: Original strand, 45078769 - 45078958
Alignment:
| Q |
344 |
atcaaacctgctgtaaattggatggacaaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatg |
443 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45078769 |
atcaaacctgctgtaaattggatgaacaaaccatgttggagagttgatcaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatg |
45078868 |
T |
|
| Q |
444 |
tatggcctagtgattttcatttgacccttgtggaacttctcccaccaagtagatccttgtccatcaattgtcccattgttaccttatgaa |
533 |
Q |
| |
|
||||| ||||||| | ||| ||| ||||||||| || ||||||||| |||||||||||||||||||||||||||| ||||| |||| |
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|
| T |
45078869 |
tatggtctagtgagtgtcaattgtttcttgtggaatttgtcccaccaatatgatccttgtccatcaattgtcccattgtcaccttttgaa |
45078958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 169 - 284
Target Start/End: Original strand, 45067897 - 45068012
Alignment:
| Q |
169 |
atacattacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaat |
268 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |
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|
| T |
45067897 |
atacattaccagggtctatgccatctgtgtttggaacgtccactggtgcaagaatagtaagtctatttataattatgttactgaagatataaagtttagt |
45067996 |
T |
|
| Q |
269 |
cagaagaatgaaataa |
284 |
Q |
| |
|
|||| |||| |||||| |
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|
| T |
45067997 |
cagatgaataaaataa |
45068012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 175 - 276
Target Start/End: Original strand, 45078620 - 45078721
Alignment:
| Q |
175 |
tacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcagaag |
274 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||||| ||| || ||| || |||||||| |
|
|
| T |
45078620 |
tacctgggtttattccatctgtgtttggagagtctactggtgcaagaatggtaagtccatttataattatgttactgcagaaatgaagcttgatcagaag |
45078719 |
T |
|
| Q |
275 |
aa |
276 |
Q |
| |
|
|| |
|
|
| T |
45078720 |
aa |
45078721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 45067674 - 45067711
Alignment:
| Q |
12 |
cagagacaatgtagttgtcttcaatcagaacatttgta |
49 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
45067674 |
cagagacaatgtagttgtcttcaattagaacgtttgta |
45067711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 8e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 173 - 530
Target Start/End: Original strand, 34505293 - 34505652
Alignment:
| Q |
173 |
attacctgggtctatgccatctgtgtttggaacgtccactggtgcaagaattgtaagtccgtttataattatgttactgaagatataaagtttaatcaga |
272 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||| |||||||||||||| ||||| || |||||||||||||||||||||| |||||| || |||| | |
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|
| T |
34505293 |
attacctgggtctattccatctgtgtttggagagtctactggtgcaagaatggtaagaccctttataattatgttactgaagaaataaagcttgatcaaa |
34505392 |
T |
|
| Q |
273 |
agaatgaaataacacacacatatagaaaa-taatgctttaaataaagttgagaaat-ttgaaaatggcgactcatcaaacctgctgtaaattggatggac |
370 |
Q |
| |
|
||||||||||| | ||| |||||| |||| | | | ||||||||| |||||||||| | | |||||||||||||||| |||||||||| |
|
|
| T |
34505393 |
agaatgaaatattgtatgtataaagaaaaataataaagatattgaggttgagaaaaattgaaaatggtgcattatcaaacctgctgtaagttggatggac |
34505492 |
T |
|
| Q |
371 |
aaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgaccc |
470 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
34505493 |
aaaccaagaaggggaattgatcaaagtgagatttgatatttggatttgatcagaatacaaaatctcaatcatgtatggcctagtgattttcaattgttta |
34505592 |
T |
|
| Q |
471 |
ttgtggaacttctcccaccaagtagatccttgtccatcaattgtcccattgttaccttat |
530 |
Q |
| |
|
|| || ||||| ||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34505593 |
ttatgaaacttgtcccaccaatatgatccttgtccatcaattgtcccgttgttaccttat |
34505652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 34505009 - 34505057
Alignment:
| Q |
12 |
cagagacaatgtagttgtcttcaatcagaacatttgtagatgaatctgt |
60 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| || |||||||||||||| |
|
|
| T |
34505009 |
cagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgt |
34505057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 370 - 521
Target Start/End: Original strand, 17587920 - 17588071
Alignment:
| Q |
370 |
caaaccaaaaaggggaattgaccaaagtgagatttgatatttggatttgatcagaatacataatctcaatcatgtatggcctagtgattttcatttgacc |
469 |
Q |
| |
|
|||||||| | || ||||| | |||||| |||||||||||||| |||| | ||| ||||||||||||||| ||||||||| |||| ||||| || | | |
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|
| T |
17587920 |
caaaccaagatggagaattaaacaaagtaagatttgatatttgaattttgttagagaacataatctcaatcaagtatggcctggtgagtttcaattcatc |
17588019 |
T |
|
| Q |
470 |
cttgtggaacttctcccaccaagtagatccttgtccatcaattgtcccattg |
521 |
Q |
| |
|
||||||||||| | ||||||| ||| ||||| ||||||||||| |||||| |
|
|
| T |
17588020 |
tttgtggaacttgttccaccaataagaaccttgaccatcaattgttccattg |
17588071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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