View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_7 (Length: 587)
Name: NF13055_low_7
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 9 - 566
Target Start/End: Complemental strand, 26882595 - 26882036
Alignment:
| Q |
9 |
acatcatcaaaacacaaaccaacactagatgcaacttgacatgtttgcttaaactttttgcatggcaaaatgactttaaccctaatttacnnnnnnnnnn |
108 |
Q |
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| T |
26882595 |
acatcatcaaaacacaaaccaacactagatgcaacttcacatgtttgcttaaactttttgcatggcaaaatgactttaaccctaatttacaaaaaaaaaa |
26882496 |
T |
|
| Q |
109 |
ca--tcagtataagtttgggtgataatttattggttagcctgagaacgttagaggcctaggattatcactgcaatagcaagtagcataggttctcccata |
206 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26882495 |
cacatcagtacaagtttgggtgataatttattggttagcctgagaacgttagaggcctaggattatcactgcaatagcaagtagcataggttctcccata |
26882396 |
T |
|
| Q |
207 |
attatagatgatataacaaataagcctatgtttgataggacttttgcccaatatgtgagagccttggttgacatggatctatcccaaaccctaagttaca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26882395 |
attatagatgatataacaaataagcctatgtttgataggacttttgcccaatatgtgagagccttggttgacatggatctatcccaaaccctaagttaca |
26882296 |
T |
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| Q |
307 |
aagtgttggtagagagaaagtttattttttgttagacttagaatatgaaaatttatcagaattttgtgctcattgtaacatggtgggtcattatttggaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26882295 |
aagtgttggtagagagaaagtttattttttgttagacttagaatatgaaaatttatcagaattttgtgctcattgtaacatggtgggtcattatttggaa |
26882196 |
T |
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| Q |
407 |
atatgcaagagagttcaagttacacgcgaagaggtagctaataaagaaccaagaaacaaaactattttgcagacaaaagatgacagggtgcaacatggca |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26882195 |
atatgcaagagagttcaagttacacgcgaagaggtagctaataaagaaccaagaaacaaaactattttgcagacaaaagatgacagggtgcaacatggca |
26882096 |
T |
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| Q |
507 |
ctgacaaagaagaagtaaacattgaaaatcaagcaatcaaaggcgttggaaacacaaata |
566 |
Q |
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| T |
26882095 |
ctgacaaagaagaagtaaacattgaaaatcaagcaatcaaaggcgttggaaacacaaata |
26882036 |
T |
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