View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13055_low_9 (Length: 536)
Name: NF13055_low_9
Description: NF13055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13055_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 29 - 521
Target Start/End: Original strand, 13410156 - 13410648
Alignment:
| Q |
29 |
ctctgacatgatcagagactatttggaatattctcatattcttcaaagctctggtgattttcaactacaacaaatgcagcagcaacaacaattacaagct |
128 |
Q |
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| T |
13410156 |
ctctgacatgatcagagactatttggaatattctcatattcttcaaagctctggtgattttcaactacaacaaatgcagcagcaacaacaattacaagct |
13410255 |
T |
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| Q |
129 |
tctaatttggttcaacaatggtattataattcacaaatggctgcactacaatcacattcattgttatcatcttcatcactttctatgaattctaatatgt |
228 |
Q |
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| T |
13410256 |
tctaatttggttcaacaatggtattataattcacaaatggctgcactacaatcacattcattgttatcatcttcatcactttctatgaattctaatatgt |
13410355 |
T |
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| Q |
229 |
taccatcaactccttcattttcaccttccactcaactttcatcctcctctgcttcttttcccctgttttctagtcaacaaatgggatttttccggccgcc |
328 |
Q |
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| T |
13410356 |
taccatcaactccttcattttcaccttccactcaactttcatcctcctctgcttcttttcccctgttttctagtcaacaaatgggatttttccggccgcc |
13410455 |
T |
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| Q |
329 |
agaaaaccgaccgcctggtggtagccgtggtggtggaacagagttaccaccgtcgacgtggtcagatactagtggccatccgccaccaccttatggttga |
428 |
Q |
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| T |
13410456 |
agaaaaccgaccgcctggtggtagccgtggtggtggaacagagttaccaccgtcgacgtggtcagatactagtggccatccgccaccaccttatggttga |
13410555 |
T |
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| Q |
429 |
tacgaagatattaaatgttggaaaccatagtattaaatatcggacatcagacacactttcgatcagaaatgtcggtgttaatgcggttgtgag |
521 |
Q |
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| T |
13410556 |
tacgaagatattaaatgttggacaccatagtattaaatatcggacatcagacacactttcgatcagaaacgtcggtgttaatgcggttgtgag |
13410648 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 508
Target Start/End: Original strand, 36286535 - 36286567
Alignment:
| Q |
476 |
cagacacactttcgatcagaaatgtcggtgtta |
508 |
Q |
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| T |
36286535 |
cagacacactttcgatcagaagtgtcggtgtta |
36286567 |
T |
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