View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13056_high_1 (Length: 413)
Name: NF13056_high_1
Description: NF13056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13056_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 52251021 - 52251414
Alignment:
| Q |
1 |
caaattccctgtcatagctctctgatacattacagatttctccaaaacttgatcatcattataagaaccagggtaaccaagaaaaacatcagtgaaaacc |
100 |
Q |
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| T |
52251021 |
caaattccctgtcatagctctctgatacattacagatttctccaaaacttgatcatcattataagaaccagggtaaccaagaaaaacatcagtgaaaacc |
52251120 |
T |
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| Q |
101 |
cctttagcatcaaccacaccttgaacagtaacagagtatgcagttttctggttcctctgagtctgcctcttattgaaataagaattcacattgttcttag |
200 |
Q |
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| T |
52251121 |
cctttagcatcaaccacaccttgaacagtaacagagtatgcagttttctggttcctctgagtctgcctcttattgaaataagaattcacattgttcttag |
52251220 |
T |
|
| Q |
201 |
gtgcaattattggaatatgtgtggtatacattgaaccaccaacatttggcattccaaaaagactctcaaactcttgtttaatcaaattcatcttattttc |
300 |
Q |
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| T |
52251221 |
gtgcaattattggaatatgtgtggtatacattgaaccaccaacatttggcattccaaaaagaccctcaaactcttgtttaatcaaattcatcttattttc |
52251320 |
T |
|
| Q |
301 |
atcaggccaagtaataaactttggcataagaactttcttgattgcagcacaaacctcaagaaccagcttatgacaggtggatatacccaaaccg |
394 |
Q |
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| T |
52251321 |
atcaggccaagtaataaactttggcataagaactttcttgattgcagcacaaacctcaagaaccagcttatgacaggtggatatacccaaaccg |
52251414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 35 - 393
Target Start/End: Original strand, 52262697 - 52263058
Alignment:
| Q |
35 |
gatttctccaaaacttgatcatcattataagaaccagggtaaccaagaaaaacatcagtgaaaacccctttagcatcaaccacaccttgaacagtaacag |
134 |
Q |
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| T |
52262697 |
gatttctcgaaaacctattcatcagaataagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaag |
52262796 |
T |
|
| Q |
135 |
agtatgcagttttctggttcctctgagtctgcctcttattgaaata---agaattcacattgttcttaggtgcaattattggaatatgtgtggtatacat |
231 |
Q |
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| T |
52262797 |
agtaagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcacattggagttaggtgcaattatgggaatatgagtagtataaac |
52262896 |
T |
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| Q |
232 |
tgaaccaccaacatttggcattccaaaaagactctcaaactcttgtttaatcaaattcatcttattttcatcaggccaagtaataaactttggcataaga |
331 |
Q |
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| T |
52262897 |
tgaaccaccaacatttggtattccagaaagaccctcaaactcttgtttaaccaatatcatgttattttcatctggccatagaatgaactttggcataaga |
52262996 |
T |
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| Q |
332 |
actttcttgattgcagcacaaacctcaagaaccagcttatgacaggtggatatacccaaacc |
393 |
Q |
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| T |
52262997 |
acggtttttatttcagagcaaacatctagaacgagcttgtgacatgtggataaacccaaacc |
52263058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 3702336 - 3702272
Alignment:
| Q |
65 |
gaaccagggtaaccaagaaaaacatcagtgaaaacccctttagcatcaaccacaccttgaacagt |
129 |
Q |
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|||||||| |||||| | |||||||||||||||| || || | |||||| |||||||||||||| |
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| T |
3702336 |
gaaccaggccaaccaatacaaacatcagtgaaaacaccatttgtatcaacaacaccttgaacagt |
3702272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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