View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13056_high_3 (Length: 309)
Name: NF13056_high_3
Description: NF13056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13056_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 13651344 - 13651617
Alignment:
| Q |
20 |
acaaacactataaaatgctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgtagaaaaatggaaacaccgcatgtgttaatc |
119 |
Q |
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| T |
13651344 |
acaaacactataaaaagctactaccaaatagcatcttatcttatcctatagatcacaaaattgagattgttgaaaaatggaaacaccgcatgtgttaatc |
13651443 |
T |
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| Q |
120 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgagtaca |
219 |
Q |
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| T |
13651444 |
ttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgaataca |
13651543 |
T |
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| Q |
220 |
tccacaacagactcattaatttgaa---tgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
290 |
Q |
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| T |
13651544 |
tccacaacagactcattagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
13651617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 108 - 290
Target Start/End: Original strand, 13646354 - 13646536
Alignment:
| Q |
108 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
207 |
Q |
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| T |
13646354 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcactttcctca |
13646453 |
T |
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| Q |
208 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
290 |
Q |
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| T |
13646454 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattc |
13646536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 290
Target Start/End: Original strand, 13656680 - 13656862
Alignment:
| Q |
108 |
catgtgttaatcttcccatgtccagcacaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaa |
207 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| | |||| || || || | |
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| T |
13656680 |
catgtgctaatcttcccatgtccagcacaaggccatgtaaatccaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcacttttctca |
13656779 |
T |
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| Q |
208 |
acactgagtacatccacaacagactcattaatttgaatgatgatgttaaatcaatttcacaatgttaccctaagcttcaattc |
290 |
Q |
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| T |
13656780 |
acaccaaatacatccataaccgactcatacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattc |
13656862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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