View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13056_low_2 (Length: 395)

Name: NF13056_low_2
Description: NF13056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13056_low_2
NF13056_low_2
[»] chr5 (6 HSPs)
chr5 (1-216)||(33915944-33916160)
chr5 (296-381)||(33916240-33916323)
chr5 (38-147)||(19071853-19071965)
chr5 (152-198)||(27586821-27586867)
chr5 (152-192)||(28675922-28675962)
chr5 (152-198)||(19071757-19071803)
[»] chr3 (6 HSPs)
chr3 (38-155)||(20742418-20742539)
chr3 (38-147)||(20734881-20734993)
chr3 (152-198)||(15749366-15749412)
chr3 (38-152)||(15749429-15749547)
chr3 (152-198)||(20742580-20742626)
chr3 (156-192)||(10708815-10708851)
[»] scaffold0063 (1 HSPs)
scaffold0063 (38-147)||(32795-32907)
[»] chr8 (4 HSPs)
chr8 (83-155)||(24709999-24710074)
chr8 (152-198)||(17809447-17809493)
chr8 (81-154)||(17809536-17809611)
chr8 (157-198)||(24710120-24710161)
[»] chr2 (5 HSPs)
chr2 (44-155)||(32129367-32129482)
chr2 (38-116)||(23174490-23174570)
chr2 (38-116)||(23585747-23585827)
chr2 (152-198)||(17881335-17881381)
chr2 (152-192)||(32129522-32129562)
[»] scaffold0193 (2 HSPs)
scaffold0193 (58-145)||(18408-18498)
scaffold0193 (152-192)||(18316-18356)
[»] scaffold2020 (2 HSPs)
scaffold2020 (38-145)||(570-679)
scaffold2020 (152-192)||(731-771)
[»] scaffold0009 (2 HSPs)
scaffold0009 (38-145)||(164816-164925)
scaffold0009 (152-192)||(164724-164764)
[»] chr4 (2 HSPs)
chr4 (44-116)||(17313206-17313279)
chr4 (38-145)||(12612654-12612765)
[»] chr7 (2 HSPs)
chr7 (38-147)||(18822316-18822428)
chr7 (152-192)||(26255027-26255067)
[»] chr1 (1 HSPs)
chr1 (159-192)||(9303044-9303077)
[»] scaffold0058 (1 HSPs)
scaffold0058 (152-192)||(68654-68694)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 33915944 - 33916160
Alignment:
Q  1 ttttacaatcttcttgagcaatccccttttaggaagttcgcgatgattttcggatataagctattgattagcattgacttgcaattttaagttcaccacc 100  Q
    |||||||||||||||||| | ||||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33915944 ttttacaatcttcttgagtagtccccttttaggaatgtcgcggtgattttcggatataagctattgattagcgttgacttgcaattttaagttcaccacc 33916043  T
Q  101 gagcttttattctttcaa-gaaaagggaaaaggttcgaataaaccctaatttttagcaccctaaacgtctatagtactctacaggaacctcttacttttt 199  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  33916044 gagcttttattctttcaaggaaaagagaaaaggttcgaataaaccctaatttttagcaccctaaacgtctatagtactctacaggaaccttttgcttttt 33916143  T
Q  200 agttctggttcagccga 216  Q
    ||||||||||| |||||    
T  33916144 agttctggttcggccga 33916160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 296 - 381
Target Start/End: Original strand, 33916240 - 33916323
Alignment:
Q  296 cactggattttttatgaggttatggtgttgtttggtttcggattttttatgagggttatatggtgtagttggtttcggatttttga 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  33916240 cactggattttttatgaggttatggtgttgtttggtttcggattttttatgagggt--tatggtgtagttggtttcggatttttga 33916323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 19071965 - 19071853
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagcttttattcttt-caa-gaaaagggaaaaggtt 134  Q
    ||||| |||||||||||||| ||||||||  ||||| |||||| |||| ||| |||||||||| ||||||||||| ||| ||| |||||||| ||| |||    
T  19071965 tcgcggtgattttcggatatcaagctattagttagcgttgactcgcaaattttagttcaccactgagcttttattttttacaaggaaaaggggaaaagtt 19071866  T
Q  135 cgaataaacccta 147  Q
     ||||||||||||    
T  19071865 tgaataaacccta 19071853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 27586867 - 27586821
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctcttactttt 198  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  27586867 ttagcaccctaaatgtctatagtactctataggaacctcttgctttt 27586821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 28675962 - 28675922
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctctt 192  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  28675962 ttagcatcctaaacgtctatagtactctataggaacctctt 28675922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 19071803 - 19071757
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctcttactttt 198  Q
    ||||| ||||||||||||||||||||||| ||||||| ||| |||||    
T  19071803 ttagccccctaaacgtctatagtactctataggaaccccttgctttt 19071757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 155
Target Start/End: Original strand, 20742418 - 20742539
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagctttt-attctttc-aagaaaagggaaaaggtt 134  Q
    |||||||||||||||||||| ||||||||| ||||| |||||| | |||||| | ||||||||||||||||| ||| |||| |||||||||| ||| | |    
T  20742418 tcgcgatgattttcggatatcaagctattggttagcgttgactcgtaatttttaattcaccaccgagcttttaattttttcaaagaaaaggggaaaagat 20742517  T
Q  135 cgaataaacccta-atttttag 155  Q
    ||||||||||||| ||||||||    
T  20742518 cgaataaaccctatatttttag 20742539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 20734881 - 20734993
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagcttttattctttc--aagaaaagggaaaaggtt 134  Q
    ||||| |||||||||||||| ||| ||||| ||||| |||||| |||||||| | ||||||||||| |||||||| ||||  |||||||||| ||| | |    
T  20734881 tcgcggtgattttcggatatcaagatattggttagcgttgactcgcaatttttaattcaccaccgaacttttattttttccaaagaaaaggggaaaagat 20734980  T
Q  135 cgaataaacccta 147  Q
    |||||||||||||    
T  20734981 cgaataaacccta 20734993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 15749412 - 15749366
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctcttactttt 198  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  15749412 ttagcaccctaaacgtctatagtactctataggaacctcttgctttt 15749366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 15749547 - 15749429
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaa-ttttaagttcaccaccgagcttttattctttcaa--gaaaagggaaaaggt 133  Q
    ||||| ||||||| |||||| |||||||||||  || ||||||  ||| ||||||||||||||| ||||| ||||| ||||||  ||||| | |||| |     
T  15749547 tcgcggtgatttttggatatcaagctattgatctgcgttgactcacaaattttaagttcaccactgagctcttattttttcaaaggaaaaagaaaaaaga 15749448  T
Q  134 tcgaataaaccctaatttt 152  Q
    |||||||||||||| ||||    
T  15749447 tcgaataaaccctattttt 15749429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 20742580 - 20742626
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctcttactttt 198  Q
    |||||| |||| ||||||||||||||||| ||||||||||| |||||    
T  20742580 ttagcaacctagacgtctatagtactctataggaacctcttgctttt 20742626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 10708815 - 10708851
Alignment:
Q  156 caccctaaacgtctatagtactctacaggaacctctt 192  Q
    |||| |||||||||||||||||||| |||||||||||    
T  10708815 caccttaaacgtctatagtactctataggaacctctt 10708851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 32907 - 32795
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagcttttattctttc--aagaaaagggaaaaggtt 134  Q
    ||||| |||||||||||||| ||| ||||| ||||| ||||||  ||||||| ||||||||| |||||||||||| ||||  | |||||||| ||| | |    
T  32907 tcgcggtgattttcggatatcaagttattggttagcgttgactcacaatttttagttcaccatcgagcttttattttttccaaggaaaaggggaaaagat 32808  T
Q  135 cgaataaacccta 147  Q
    |||||||||||||    
T  32807 cgaataaacccta 32795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 24709999 - 24710074
Alignment:
Q  83 aattttaagttcaccaccgagcttttattctttc--aagaaaagggaaaaggttcgaataaacccta-atttttag 155  Q
    ||||||||||||||||||||||||||||| ||||  | |||||||| ||| |||||||||||||||| ||||||||    
T  24709999 aattttaagttcaccaccgagcttttattttttccaaggaaaaggggaaaagttcgaataaaccctatatttttag 24710074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 17809493 - 17809447
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctcttactttt 198  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||    
T  17809493 ttagcaccttaaacgtctatagtactctataggaacctcttgctttt 17809447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 17809611 - 17809536
Alignment:
Q  81 gcaattttaagttcaccaccgagcttttattctttcaa--gaaaagggaaaaggttcgaataaaccctaattttta 154  Q
    |||||||| |||||| ||| ||||||||||| |||| |  |||||||| ||| | |||||||||||||||||||||    
T  17809611 gcaatttttagttcatcactgagcttttattttttccaaggaaaaggggaaaagatcgaataaaccctaattttta 17809536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 24710120 - 24710161
Alignment:
Q  157 accctaaacgtctatagtactctacaggaacctcttactttt 198  Q
    ||||||||||||||||| |||||| ||||||||||| |||||    
T  24710120 accctaaacgtctatagcactctataggaacctcttgctttt 24710161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 32129367 - 32129482
Alignment:
Q  44 tgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagcttttattctttc--aagaaaagggaaaaggttcgaata 140  Q
    ||||||||||| || ||||||||||||||| ||||||| ||||||| ||||  |||||||||||||||| ||||  | ||||| || ||| | |||||||    
T  32129367 tgattttcggagatcaagctattgattagctttgacttacaatttttagttttccaccgagcttttattttttccaaggaaaatgggaaaagatcgaata 32129466  T
Q  141 aacccta-atttttag 155  Q
    ||||||| ||||||||    
T  32129467 aaccctatatttttag 32129482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 23174570 - 23174490
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgatt-agcattgacttgcaattttaagttcaccaccgagcttttattctttc 116  Q
    |||||||||||| ||||||| ||||| ||| || ||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  23174570 tcgcgatgatttacggatatcaagcttttggtttagcgttgactcacaattttaagttcaccaccgagcttttattttttc 23174490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 23585827 - 23585747
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgatt-agcattgacttgcaattttaagttcaccaccgagcttttattctttc 116  Q
    |||||||||||| ||||||| ||||| ||| || ||| ||||||  |||||||||||||||||||||||||||||| ||||    
T  23585827 tcgcgatgatttacggatatcaagcttttggtttagcgttgactcacaattttaagttcaccaccgagcttttattttttc 23585747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 17881381 - 17881335
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctcttactttt 198  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  17881381 ttagcaccctaaacgtctatagtattctataggaacctcttgctttt 17881335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 32129522 - 32129562
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctctt 192  Q
    ||||||||| ||||||||||||||||||| | |||||||||    
T  32129522 ttagcaccccaaacgtctatagtactctataagaacctctt 32129562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 18498 - 18408
Alignment:
Q  58 aagctattgattagcattgacttgcaattttaagttcaccaccgagcttttattctttcaa---gaaaagggaaaaggttcgaataaaccc 145  Q
    ||||||||||||||| ||||||  ||| |||| ||||||||||||||||| ||| ||||||   |||  ||||||| ||||||||||||||    
T  18498 aagctattgattagcgttgactgacaaatttaggttcaccaccgagctttaattttttcaaagggaatggggaaaaagttcgaataaaccc 18408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 18356 - 18316
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctctt 192  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  18356 ttagcaccctaaacatctatagtactctataggaacctctt 18316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 570 - 679
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagctttta-ttctttcaagaaaagggaaaaggttc 135  Q
    ||||| |||||||||||||| |||||||||||||| |||||||  ||| |||   ||||||| |||||||| | || |||||||  ||||| ||| ||||    
T  570 tcgcggtgattttcggatatcaagctattgattagtattgactcacaaatttttattcaccagcgagctttaatttttttcaagggaaggggaaaagttc 669  T
Q  136 gaataaaccc 145  Q
    ||||||||||    
T  670 gaataaaccc 679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2020; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 731 - 771
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctctt 192  Q
    ||||||||||||||||||||| || |||| |||||||||||    
T  731 ttagcaccctaaacgtctatattattctataggaacctctt 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 164925 - 164816
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagctttta-ttctttcaagaaaagggaaaaggttc 135  Q
    ||||| |||||||||||||| |||||||||||||| |||||||  ||| |||   ||||||| |||||||| | || |||||||  ||||| ||| ||||    
T  164925 tcgcggtgattttcggatatcaagctattgattagtattgactcacaaatttttattcaccagcgagctttaatttttttcaagggaaggggaaaagttc 164826  T
Q  136 gaataaaccc 145  Q
    ||||||||||    
T  164825 gaataaaccc 164816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 164764 - 164724
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctctt 192  Q
    ||||||||||||||||||||| || |||| |||||||||||    
T  164764 ttagcaccctaaacgtctatattattctataggaacctctt 164724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 17313279 - 17313206
Alignment:
Q  44 tgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagcttttattctttc 116  Q
    ||||||| |||||| ||||||||| ||||| |||| |  ||| |||||||||||||||||||||||||| ||||    
T  17313279 tgatttttggatatcaagctattggttagcgttgaatcacaaatttaagttcaccaccgagcttttattttttc 17313206  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 145
Target Start/End: Original strand, 12612654 - 12612765
Alignment:
Q  38 tcgcgatgattttcggatat-aagctattgattagcattgacttgcaattttaagttcaccaccgagctttta-ttctttcaa--gaaaagggaaaaggt 133  Q
    ||||| ||||||||||| || ||||||||||||||| ||||||  ||| |||| |||||||||| |||||| | || ||||||  |||| ||| ||| ||    
T  12612654 tcgcggtgattttcggagatcaagctattgattagcgttgactcacaaatttaggttcaccaccaagctttaatttttttcaagggaaatggggaaaagt 12612753  T
Q  134 tcgaataaaccc 145  Q
    ||||||||||||    
T  12612754 tcgaataaaccc 12612765  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 18822428 - 18822316
Alignment:
Q  38 tcgcgatgattttcggata-taagctattgattagcattgacttgcaattttaagttcaccaccgagctttta-ttctttcaa-gaaaagggaaaaggtt 134  Q
    ||||| ||||||||||||| |||  ||||| ||||| ||||||| ||||||| |||| |||||||| |||||| || |||||| |||||||  ||| | |    
T  18822428 tcgcggtgattttcggatattaaattattggttagcgttgacttacaatttttagtttaccaccgaacttttatttttttcaaggaaaaggagaaatgct 18822329  T
Q  135 cgaataaacccta 147  Q
    |||||||||||||    
T  18822328 cgaataaacccta 18822316  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 26255027 - 26255067
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctctt 192  Q
    ||||||||||||||||||||||||  ||| |||||||||||    
T  26255027 ttagcaccctaaacgtctatagtatcctataggaacctctt 26255067  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 192
Target Start/End: Original strand, 9303044 - 9303077
Alignment:
Q  159 cctaaacgtctatagtactctacaggaacctctt 192  Q
    |||||||||||||||||||||| |||||||||||    
T  9303044 cctaaacgtctatagtactctataggaacctctt 9303077  T

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Target: scaffold0058 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Original strand, 68654 - 68694
Alignment:
Q  152 ttagcaccctaaacgtctatagtactctacaggaacctctt 192  Q
    |||||||||||||||||| |||||  |||||||||||||||    
T  68654 ttagcaccctaaacgtctgtagtatcctacaggaacctctt 68694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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