View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13057_high_12 (Length: 234)

Name: NF13057_high_12
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13057_high_12
NF13057_high_12
[»] chr8 (5 HSPs)
chr8 (40-216)||(19734180-19734356)
chr8 (162-214)||(18148824-18148876)
chr8 (165-216)||(17062359-17062410)
chr8 (165-216)||(17585948-17585999)
chr8 (175-216)||(24195249-24195290)
[»] chr4 (8 HSPs)
chr4 (169-216)||(34969413-34969460)
chr4 (169-216)||(15170119-15170166)
chr4 (169-216)||(27594321-27594368)
chr4 (169-216)||(51436626-51436673)
chr4 (169-215)||(4916149-4916195)
chr4 (170-216)||(10069108-10069154)
chr4 (166-216)||(36720669-36720719)
chr4 (174-216)||(51298716-51298758)
[»] chr6 (3 HSPs)
chr6 (166-216)||(13496107-13496157)
chr6 (165-213)||(19277564-19277612)
chr6 (169-216)||(3358385-3358432)
[»] chr5 (5 HSPs)
chr5 (169-215)||(689541-689587)
chr5 (169-216)||(40837923-40837970)
chr5 (172-216)||(12285622-12285666)
chr5 (172-216)||(13864341-13864385)
chr5 (168-216)||(18589887-18589935)
[»] chr7 (4 HSPs)
chr7 (170-215)||(7720223-7720268)
chr7 (169-216)||(29726794-29726841)
chr7 (178-216)||(31723424-31723462)
chr7 (167-215)||(26980957-26981005)
[»] chr2 (5 HSPs)
chr2 (168-216)||(13196693-13196741)
chr2 (169-212)||(13835664-13835707)
chr2 (167-216)||(18789407-18789456)
chr2 (163-215)||(1244858-1244910)
chr2 (168-216)||(6723097-6723145)
[»] scaffold0118 (1 HSPs)
scaffold0118 (169-216)||(45406-45453)
[»] chr3 (2 HSPs)
chr3 (169-215)||(23332644-23332690)
chr3 (158-215)||(53221941-53221998)
[»] chr1 (2 HSPs)
chr1 (175-216)||(15382839-15382880)
chr1 (180-216)||(27785988-27786024)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 19734180 - 19734356
Alignment:
Q  40 tgtaatatagggtttttaacaagttaatgtagtataatcaattcaataagttttatttattttttaactatttaggagaggaaaatagagattgatgctt 139  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19734180 tgtaatatagggtttttaacaagttaatgtaatataatcaattcaataagttttatttattttttaactatttaggagaggaaaatagagattgatgctt 19734279  T
Q  140 gacgtacgtgttcaaaagaaagtttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||| |||||||||||    
T  19734280 gacgtacgtgttcaaaagaatgtttgaaagtccttgtaaacttagctcagttggtttgaacaatacataatatatgc 19734356  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 18148876 - 18148824
Alignment:
Q  162 tttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatat 214  Q
    ||||||||||||||||| |||||||||||| || ||||||||  |||||||||    
T  18148876 tttaaaagtcctcgtgagcttaactcagttaatatgaacaatgcataatatat 18148824  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 17062410 - 17062359
Alignment:
Q  165 aaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||| ||||||||||||||| |  |||||| |||||||||||    
T  17062410 aaaagtcctcgtgagcttaactcagttgatatagacaatacataatatatgc 17062359  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 17585948 - 17585999
Alignment:
Q  165 aaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||| ||||||||||||||| |  |||||| |||||||||||    
T  17585948 aaaagtcctcgtgagcttaactcagttgatatagacaatacataatatatgc 17585999  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 24195249 - 24195290
Alignment:
Q  175 gtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||| |||||||||| ||||||||| |||||||||||    
T  24195249 gtgaacttagctcagttgatatgaacaatacataatatatgc 24195290  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 34969460 - 34969413
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  34969460 gtcctcgtaaacttaacttagttgatatgaacaatatataatatatgc 34969413  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 15170166 - 15170119
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||| | ||||||||  |||||||||||    
T  15170166 gtcctcgtgaacttaactcagttggtatgaacaatgcataatatatgc 15170119  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 27594321 - 27594368
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||| |||||||| || ||||||||||||| ||||||    
T  27594321 gtcctcgtgaacttagctcagttggttggaacaatatataaaatatgc 27594368  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 51436673 - 51436626
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||||||||||||||  |||||||  |||||||||||    
T  51436673 gtcctcgtgaacttaactcagttgatacgaacaatgcataatatatgc 51436626  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 4916149 - 4916195
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    ||||||||||||||| |||||||| ||||||||||  ||||||||||    
T  4916149 gtcctcgtgaacttagctcagttggtttgaacaatgcataatatatg 4916195  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 10069154 - 10069108
Alignment:
Q  170 tcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||| |||||||| | |||||||| ||||||||||||    
T  10069154 tcctcgtgaacttagctcagttggtatgaacaatgtataatatatgc 10069108  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 36720669 - 36720719
Alignment:
Q  166 aaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||||||||||| ||| |  ||||||| ||||||||||||    
T  36720669 aaagtcctcgtgaacttaactcaattggtaggaacaatgtataatatatgc 36720719  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 51298758 - 51298716
Alignment:
Q  174 cgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  51298758 cgtgaacttaactcagttgataaggacaatatataatatatgc 51298716  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 13496107 - 13496157
Alignment:
Q  166 aaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||||||    
T  13496107 aaagtcctcgtgagcttaactcagttgatatgaacaatgcataatatatgc 13496157  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 19277564 - 19277612
Alignment:
Q  165 aaaagtcctcgtgaacttaactcagttgatttgaacaatatataatata 213  Q
    ||||||||||||||||||||||||||||||  |||||||  ||||||||    
T  19277564 aaaagtcctcgtgaacttaactcagttgataggaacaatgcataatata 19277612  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 3358385 - 3358432
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||||    
T  3358385 gtcctcgtgaacttaactcagttggtttggacaatgcataatatatgc 3358432  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 689541 - 689587
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||    
T  689541 gtcctcgtgaacttaactcagttgatatggacaatgtataatatatg 689587  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 40837970 - 40837923
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||| | || ||||||||||| ||||||    
T  40837970 gtcctcgtgaacttaactcagttggtatggacaatatataaaatatgc 40837923  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 12285666 - 12285622
Alignment:
Q  172 ctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||    ||||||||||||||||||    
T  12285666 ctcgtgaacttaactcagttgataaagacaatatataatatatgc 12285622  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 13864341 - 13864385
Alignment:
Q  172 ctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||| ||||||||||||| | ||||||||| |||||||||||    
T  13864341 ctcgtgagcttaactcagttggtatgaacaatacataatatatgc 13864385  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 18589935 - 18589887
Alignment:
Q  168 agtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||| ||||||||||||| | ||||||||  |||||||||||    
T  18589935 agtcctcgtgagcttaactcagttggtatgaacaatgcataatatatgc 18589887  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 7720268 - 7720223
Alignment:
Q  170 tcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||    
T  7720268 tcctcgtgaacctaactcagttgatatggacaatatataatatatg 7720223  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 29726794 - 29726841
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||| ||||||||||||||  |||||||| ||||||||||||    
T  29726794 gtcctcgtgagcttaactcagttgacatgaacaatgtataatatatgc 29726841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 31723462 - 31723424
Alignment:
Q  178 aacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  31723462 aacttaactcagttgataagaacaatatataatatatgc 31723424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 26981005 - 26980957
Alignment:
Q  167 aagtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||| ||||||| ||||||||||||||| |||||||| |||| ||||||    
T  26981005 aagtactcgtgagcttaactcagttgatatgaacaatgtatattatatg 26980957  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 13196693 - 13196741
Alignment:
Q  168 agtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||||||||||||| | ||||||||  |||||||||||    
T  13196693 agtcctcgtgaacttaactcagttggtatgaacaatgcataatatatgc 13196741  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 13835664 - 13835707
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatat 212  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||    
T  13835664 gtcctcgtgaacttaactcagttgataagaacaatgtataatat 13835707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 18789407 - 18789456
Alignment:
Q  167 aagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||| ||||||||||||| |||| |||||  |||||||||||    
T  18789407 aagtcctcgtgagcttaactcagttggtttggacaatgcataatatatgc 18789456  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 1244910 - 1244858
Alignment:
Q  163 ttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    ||||| |||||||||| ||||||||||||| |  | |||||||||||||||||    
T  1244910 ttaaatgtcctcgtgagcttaactcagttggtacggacaatatataatatatg 1244858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 6723145 - 6723097
Alignment:
Q  168 agtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||  |||||||||||||| || ||||| ||||||||||||    
T  6723145 agtcctcgtgagtttaactcagttgatatggacaatgtataatatatgc 6723097  T

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Target: scaffold0118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 45406 - 45453
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||| ||||||||||||| |||| |||||| |||||||||||    
T  45406 gtcctcgtgagcttaactcagttggtttggacaatacataatatatgc 45453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 23332644 - 23332690
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||||||||||||||||| ||||||| ||||||||  ||||||||||    
T  23332644 gtcctcgtgaacttaacttagttgatatgaacaatgcataatatatg 23332690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 53221941 - 53221998
Alignment:
Q  158 aaagtttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||||||||| || ||| |||||||||||||||||||  | ||||| |||||||||||    
T  53221941 aaagtttaaatgttctcatgaacttaactcagttgataaggacaatgtataatatatg 53221998  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 15382880 - 15382839
Alignment:
Q  175 gtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||| ||||||||||||||| |||||||| ||||||||||||    
T  15382880 gtgagcttaactcagttgatatgaacaatgtataatatatgc 15382839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 27786024 - 27785988
Alignment:
Q  180 cttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  27786024 cttaactcagttggtttgaacaatacataatatatgc 27785988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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