View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13057_high_9 (Length: 261)
Name: NF13057_high_9
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13057_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 10370784 - 10371042
Alignment:
| Q |
1 |
tccatgtgtaagtaagtgtcaataacacatgtagatgatgatgataataaacagttgtataaattaaattnnnnnnnntcacata------atgattttc |
94 |
Q |
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| T |
10370784 |
tccatgtgtaagtaagtgtcaataacacatgtagatgatgatgataataaacagttgtataaattaaattaaaaaaaatcacatacccataatgattttc |
10370883 |
T |
|
| Q |
95 |
attttcagcaatatgtatgtacgctgccaaatatgcttctatatcattcataaccatgtttaagaatggaaagattgaaagaggaaaatattgtnnnnnn |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10370884 |
attttcagcaatatgtatgtacgctgccaaatatgcttctatatcattcataaccatgtttaagaatggaaagattgaaagaggaaaatattgtaaaaaa |
10370983 |
T |
|
| Q |
195 |
nnnnnnnnnnntacatccatattaaactaaattatttctttctaatgatgatattcttc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10370984 |
taaataaaaaatacatccatattaaactaaattatttctttctaatgatgatattcttc |
10371042 |
T |
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