View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13057_low_1 (Length: 759)
Name: NF13057_low_1
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13057_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-165; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 366 - 744
Target Start/End: Original strand, 10501901 - 10502288
Alignment:
| Q |
366 |
cctcaccaaacaaaagaataatatatgattt------caagtttattaaacaataaacatattcggctataacttcaattttttgatattatgatcatat |
459 |
Q |
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| T |
10501901 |
cctcactaaacaaaagaataatatatgatttagcgatcaagtttattaaacaataaacatattcggctataacttcaattttttgatattatgatcatat |
10502000 |
T |
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| Q |
460 |
catataagttcataggttcctttgtgcttcatgaaattcatggcaaaatttgagtttcttaagcacatgtcacttgtatctttgattgtggttattttat |
559 |
Q |
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| T |
10502001 |
catataagttcacaggttcctttgtgcttcatgaaattcatggaaaaatttgagcttcttaggcacatgtcacttgtgtctttgattgtgcttattttat |
10502100 |
T |
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| Q |
560 |
gtacta---cacccccaatatttgctacaaaaaattgtgattttcctgccatatttagctttggtgcttcaaacgttgacactggtggtttggctgctgc |
656 |
Q |
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| T |
10502101 |
gtattattacacccccaatatttgctacaaggaattgtgattttcctgccatatttagctttggtgcttcaaacgttgacactggtggtttggctgctgc |
10502200 |
T |
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| Q |
657 |
ctttcaagcaccaccttctccatatggagagacttattttcatagatcaactggaagatactctgatggtagaatcattattgatttc |
744 |
Q |
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| T |
10502201 |
ctttcaagcaccaccttctccatatggagagacttattttcatagatcaactggaagattttctgatggtcgaatcattcttgatttc |
10502288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 453 - 744
Target Start/End: Original strand, 10507270 - 10507562
Alignment:
| Q |
453 |
atcatatcatataagttcataggttcctttgt-gcttcatgaaattcatggcaaaatttgagtttcttaagcacatgtcacttgtatctttgattgtggt |
551 |
Q |
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| T |
10507270 |
atcatataatataagtccataggttcctttattgcttcatgaaattcatggcaaaaattgagctctctaggcacatcccacttgtgactttgattgtgct |
10507369 |
T |
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| Q |
552 |
tattttatgtactacacccccaatatttgctacaaaaaattgtgattttcctgccatatttagctttggtgcttcaaacgttgacactggtggtttggct |
651 |
Q |
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| T |
10507370 |
tgttttatgtattacacccccaatatttgctacaaagaattgtgattttcctgccatatttagctttggtgcttcaaacgttgacactggtggtttggct |
10507469 |
T |
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| Q |
652 |
gctgcctttcaagcaccaccttctccatatggagagacttattttcatagatcaactggaagatactctgatggtagaatcattattgatttc |
744 |
Q |
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| T |
10507470 |
gctgcctttcgagcaccaccttctccatatggagagacttattttcatagatcaactggaagattttctgatggccgaatcattcttgatttc |
10507562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 157 - 343
Target Start/End: Original strand, 10501717 - 10501901
Alignment:
| Q |
157 |
tgtatcactaaaatttggtggaaggatgtcatgctctagccaaacacgtcatggccataacatgtgtccaaaaattctgataaaatgtctactttttggg |
256 |
Q |
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| T |
10501717 |
tgtatcactaaaatttggtggaa--atgtcatgctctagccaaacacgtcatggccataacatgtgtccaaaaattctgataaaatgtctacttgttggg |
10501814 |
T |
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| Q |
257 |
atgcatttgattgatgacttgtttgaccttttcaaccaaaggtgattaactaaatataattaatagaaaggaacccaagttttcttc |
343 |
Q |
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| T |
10501815 |
atgcatttgattgatgacttgtttgaccttttcaaccaaaggtgattaactaaatataattgctagaaaggaacccaagttttcttc |
10501901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 496 - 744
Target Start/End: Original strand, 10496416 - 10496664
Alignment:
| Q |
496 |
ttcatggcaaaatttgagtttcttaagcacatgtcacttgtatctttgattgtggttattttatgtactacacccccaatatttgctacaaaaaattgtg |
595 |
Q |
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| T |
10496416 |
ttcatggcacaaatagagtttcttaggcacatgtcacttgtgtcattgattgtgcttattttatgttctacaccccccatatttgccacaaagaattgtg |
10496515 |
T |
|
| Q |
596 |
attttcctgccatatttagctttggtgcttcaaacgttgacactggtggtttggctgctgcctttcaagcaccaccttctccatatggagagacttattt |
695 |
Q |
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| T |
10496516 |
attttcctgccatatttaactttggtgcttcaaactctgatactggtggtttagctgctgcctttcaagcactgccgttgccaaatggagagactttttt |
10496615 |
T |
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| Q |
696 |
tcatagatcaactggaagatactctgatggtagaatcattattgatttc |
744 |
Q |
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| T |
10496616 |
caatagatcaactggaagattttctgatggtcgaatcattcttgatttc |
10496664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 526 - 744
Target Start/End: Original strand, 10483501 - 10483719
Alignment:
| Q |
526 |
atgtcacttgtatctttgattgtggttattttatgtactacacccccaatatttgctacaaaaaattgtgattttcctgccatatttagctttggtgctt |
625 |
Q |
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||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||| ||||| || ||||| |||||||||||||| ||||||||||| |
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| T |
10483501 |
atgtcacttgtgtctttgattgtgcttattttatgtactagtgccccaatatctgccacaaatttttttgattgtcctgccatatttaactttggtgctt |
10483600 |
T |
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| Q |
626 |
caaacgttgacactggtggtttggctgctgcctttcaagcaccaccttctccatatggagagacttattttcatagatcaactggaagatactctgatgg |
725 |
Q |
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| T |
10483601 |
caaacgctgatactggtggtttggctgctgcctttcaagcacttcagttgccaaatggagagacttttttcaatagatcaactggaagattttctgatgg |
10483700 |
T |
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| Q |
726 |
tagaatcattattgatttc |
744 |
Q |
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| T |
10483701 |
acgaatcattattgatttc |
10483719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 10506648 - 10506700
Alignment:
| Q |
178 |
aaggatgtcatgctctagccaaacacgtcatggccataacatgtgtccaaaaa |
230 |
Q |
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| T |
10506648 |
aaggatgtcatgctctagccaaacacgtcatagccacaacatgagtccaaaaa |
10506700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 604 - 744
Target Start/End: Complemental strand, 10547548 - 10547408
Alignment:
| Q |
604 |
gccatatttagctttggtgcttcaaacgttgacactggtggtttggctgctgcctttcaagcaccaccttctccatatggagagacttattttcatagat |
703 |
Q |
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| T |
10547548 |
gccatatttaactttggtgattcaaactctgatactggtggcatggctgctgcctttgtacaaccaccaacaccttatggggagacttatttcaatagac |
10547449 |
T |
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| Q |
704 |
caactggaagatactctgatggtagaatcattattgatttc |
744 |
Q |
| |
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| T |
10547448 |
ctactggaaggtcctctgatggcagattaatcattgatttc |
10547408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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