View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13057_low_12 (Length: 234)

Name: NF13057_low_12
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13057_low_12
NF13057_low_12
[»] chr8 (5 HSPs)
chr8 (40-216)||(19734180-19734356)
chr8 (162-214)||(18148824-18148876)
chr8 (165-216)||(17062359-17062410)
chr8 (165-216)||(17585948-17585999)
chr8 (175-216)||(24195249-24195290)
[»] chr4 (8 HSPs)
chr4 (169-216)||(34969413-34969460)
chr4 (169-216)||(15170119-15170166)
chr4 (169-216)||(27594321-27594368)
chr4 (169-216)||(51436626-51436673)
chr4 (169-215)||(4916149-4916195)
chr4 (170-216)||(10069108-10069154)
chr4 (166-216)||(36720669-36720719)
chr4 (174-216)||(51298716-51298758)
[»] chr6 (3 HSPs)
chr6 (166-216)||(13496107-13496157)
chr6 (165-213)||(19277564-19277612)
chr6 (169-216)||(3358385-3358432)
[»] chr5 (5 HSPs)
chr5 (169-215)||(689541-689587)
chr5 (169-216)||(40837923-40837970)
chr5 (172-216)||(12285622-12285666)
chr5 (172-216)||(13864341-13864385)
chr5 (168-216)||(18589887-18589935)
[»] chr7 (4 HSPs)
chr7 (170-215)||(7720223-7720268)
chr7 (169-216)||(29726794-29726841)
chr7 (178-216)||(31723424-31723462)
chr7 (167-215)||(26980957-26981005)
[»] chr2 (5 HSPs)
chr2 (168-216)||(13196693-13196741)
chr2 (169-212)||(13835664-13835707)
chr2 (167-216)||(18789407-18789456)
chr2 (163-215)||(1244858-1244910)
chr2 (168-216)||(6723097-6723145)
[»] scaffold0118 (1 HSPs)
scaffold0118 (169-216)||(45406-45453)
[»] chr3 (2 HSPs)
chr3 (169-215)||(23332644-23332690)
chr3 (158-215)||(53221941-53221998)
[»] chr1 (2 HSPs)
chr1 (175-216)||(15382839-15382880)
chr1 (180-216)||(27785988-27786024)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 19734180 - 19734356
Alignment:
Q  40 tgtaatatagggtttttaacaagttaatgtagtataatcaattcaataagttttatttattttttaactatttaggagaggaaaatagagattgatgctt 139  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19734180 tgtaatatagggtttttaacaagttaatgtaatataatcaattcaataagttttatttattttttaactatttaggagaggaaaatagagattgatgctt 19734279  T
Q  140 gacgtacgtgttcaaaagaaagtttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||| |||| |||||||| || |||||| |||||||| ||||||||||| |||||||||||    
T  19734280 gacgtacgtgttcaaaagaatgtttgaaagtccttgtaaacttagctcagttggtttgaacaatacataatatatgc 19734356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 18148876 - 18148824
Alignment:
Q  162 tttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatat 214  Q
    ||||||||||||||||| |||||||||||| || ||||||||  |||||||||    
T  18148876 tttaaaagtcctcgtgagcttaactcagttaatatgaacaatgcataatatat 18148824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Complemental strand, 17062410 - 17062359
Alignment:
Q  165 aaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||| ||||||||||||||| |  |||||| |||||||||||    
T  17062410 aaaagtcctcgtgagcttaactcagttgatatagacaatacataatatatgc 17062359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 17585948 - 17585999
Alignment:
Q  165 aaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||| ||||||||||||||| |  |||||| |||||||||||    
T  17585948 aaaagtcctcgtgagcttaactcagttgatatagacaatacataatatatgc 17585999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 24195249 - 24195290
Alignment:
Q  175 gtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||| |||||||||| ||||||||| |||||||||||    
T  24195249 gtgaacttagctcagttgatatgaacaatacataatatatgc 24195290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 34969460 - 34969413
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  34969460 gtcctcgtaaacttaacttagttgatatgaacaatatataatatatgc 34969413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 15170166 - 15170119
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||| | ||||||||  |||||||||||    
T  15170166 gtcctcgtgaacttaactcagttggtatgaacaatgcataatatatgc 15170119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 27594321 - 27594368
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||| |||||||| || ||||||||||||| ||||||    
T  27594321 gtcctcgtgaacttagctcagttggttggaacaatatataaaatatgc 27594368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 51436673 - 51436626
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||||||||||||||  |||||||  |||||||||||    
T  51436673 gtcctcgtgaacttaactcagttgatacgaacaatgcataatatatgc 51436626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 4916149 - 4916195
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    ||||||||||||||| |||||||| ||||||||||  ||||||||||    
T  4916149 gtcctcgtgaacttagctcagttggtttgaacaatgcataatatatg 4916195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 10069154 - 10069108
Alignment:
Q  170 tcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||| |||||||| | |||||||| ||||||||||||    
T  10069154 tcctcgtgaacttagctcagttggtatgaacaatgtataatatatgc 10069108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 36720669 - 36720719
Alignment:
Q  166 aaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||||||||||| ||| |  ||||||| ||||||||||||    
T  36720669 aaagtcctcgtgaacttaactcaattggtaggaacaatgtataatatatgc 36720719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 51298758 - 51298716
Alignment:
Q  174 cgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  51298758 cgtgaacttaactcagttgataaggacaatatataatatatgc 51298716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 13496107 - 13496157
Alignment:
Q  166 aaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||| ||||||||||||||| ||||||||  |||||||||||    
T  13496107 aaagtcctcgtgagcttaactcagttgatatgaacaatgcataatatatgc 13496157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 19277564 - 19277612
Alignment:
Q  165 aaaagtcctcgtgaacttaactcagttgatttgaacaatatataatata 213  Q
    ||||||||||||||||||||||||||||||  |||||||  ||||||||    
T  19277564 aaaagtcctcgtgaacttaactcagttgataggaacaatgcataatata 19277612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 3358385 - 3358432
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||| |||| |||||  |||||||||||    
T  3358385 gtcctcgtgaacttaactcagttggtttggacaatgcataatatatgc 3358432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 689541 - 689587
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||||||||||||||||||||||||| || ||||| |||||||||||    
T  689541 gtcctcgtgaacttaactcagttgatatggacaatgtataatatatg 689587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 40837970 - 40837923
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||| | || ||||||||||| ||||||    
T  40837970 gtcctcgtgaacttaactcagttggtatggacaatatataaaatatgc 40837923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 12285666 - 12285622
Alignment:
Q  172 ctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||||||||    ||||||||||||||||||    
T  12285666 ctcgtgaacttaactcagttgataaagacaatatataatatatgc 12285622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 13864341 - 13864385
Alignment:
Q  172 ctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||| ||||||||||||| | ||||||||| |||||||||||    
T  13864341 ctcgtgagcttaactcagttggtatgaacaatacataatatatgc 13864385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 18589935 - 18589887
Alignment:
Q  168 agtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||| ||||||||||||| | ||||||||  |||||||||||    
T  18589935 agtcctcgtgagcttaactcagttggtatgaacaatgcataatatatgc 18589887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 7720268 - 7720223
Alignment:
Q  170 tcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||    
T  7720268 tcctcgtgaacctaactcagttgatatggacaatatataatatatg 7720223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 29726794 - 29726841
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||| ||||||||||||||  |||||||| ||||||||||||    
T  29726794 gtcctcgtgagcttaactcagttgacatgaacaatgtataatatatgc 29726841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 31723462 - 31723424
Alignment:
Q  178 aacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  31723462 aacttaactcagttgataagaacaatatataatatatgc 31723424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 26981005 - 26980957
Alignment:
Q  167 aagtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||| ||||||| ||||||||||||||| |||||||| |||| ||||||    
T  26981005 aagtactcgtgagcttaactcagttgatatgaacaatgtatattatatg 26980957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 13196693 - 13196741
Alignment:
Q  168 agtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||||||||||||||| | ||||||||  |||||||||||    
T  13196693 agtcctcgtgaacttaactcagttggtatgaacaatgcataatatatgc 13196741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 212
Target Start/End: Original strand, 13835664 - 13835707
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatat 212  Q
    ||||||||||||||||||||||||||  ||||||| ||||||||    
T  13835664 gtcctcgtgaacttaactcagttgataagaacaatgtataatat 13835707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 18789407 - 18789456
Alignment:
Q  167 aagtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||| ||||||||||||| |||| |||||  |||||||||||    
T  18789407 aagtcctcgtgagcttaactcagttggtttggacaatgcataatatatgc 18789456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Complemental strand, 1244910 - 1244858
Alignment:
Q  163 ttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    ||||| |||||||||| ||||||||||||| |  | |||||||||||||||||    
T  1244910 ttaaatgtcctcgtgagcttaactcagttggtacggacaatatataatatatg 1244858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 6723145 - 6723097
Alignment:
Q  168 agtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||||  |||||||||||||| || ||||| ||||||||||||    
T  6723145 agtcctcgtgagtttaactcagttgatatggacaatgtataatatatgc 6723097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 45406 - 45453
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||||||||| ||||||||||||| |||| |||||| |||||||||||    
T  45406 gtcctcgtgagcttaactcagttggtttggacaatacataatatatgc 45453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 23332644 - 23332690
Alignment:
Q  169 gtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||||||||||||||||| ||||||| ||||||||  ||||||||||    
T  23332644 gtcctcgtgaacttaacttagttgatatgaacaatgcataatatatg 23332690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 53221941 - 53221998
Alignment:
Q  158 aaagtttaaaagtcctcgtgaacttaactcagttgatttgaacaatatataatatatg 215  Q
    |||||||||| || ||| |||||||||||||||||||  | ||||| |||||||||||    
T  53221941 aaagtttaaatgttctcatgaacttaactcagttgataaggacaatgtataatatatg 53221998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 216
Target Start/End: Complemental strand, 15382880 - 15382839
Alignment:
Q  175 gtgaacttaactcagttgatttgaacaatatataatatatgc 216  Q
    |||| ||||||||||||||| |||||||| ||||||||||||    
T  15382880 gtgagcttaactcagttgatatgaacaatgtataatatatgc 15382839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 27786024 - 27785988
Alignment:
Q  180 cttaactcagttgatttgaacaatatataatatatgc 216  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  27786024 cttaactcagttggtttgaacaatacataatatatgc 27785988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University