View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13057_low_13 (Length: 226)
Name: NF13057_low_13
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13057_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38214575 - 38214366
Alignment:
| Q |
1 |
agaatatttttgttctgtttctgttttgcttcttgtgtattgtggtgctgcaagtaaataacgatgctatatgcatatatggtgcagttgtcatcacagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38214575 |
agaatatttttgttctgtttctgttttgcttcttgtgtattgtggtgctgcaagtaaataacgatg--------atatatggtgcagttgtcatcacagg |
38214484 |
T |
|
| Q |
101 |
gaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38214483 |
gaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacag |
38214384 |
T |
|
| Q |
201 |
agaacaacaattctacct |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
38214383 |
agaacaacaattctacct |
38214366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 38218794 - 38218585
Alignment:
| Q |
1 |
agaatatttttgttctgtttctgttttgcttcttgtgtattgtggtgctgcaagtaaataacgatgctatatgcatatatggtgcagttgtcatcacagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38218794 |
agaatatttttgttctgtttctgttttgcttcttgtgtattgtggtgctgcaagtaaataacgatg--------atatatggtgcagttgtcatcacagg |
38218703 |
T |
|
| Q |
101 |
gaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38218702 |
gaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacag |
38218603 |
T |
|
| Q |
201 |
agaacaacaattctacct |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
38218602 |
agaacaacaattctacct |
38218585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 42991023 - 42991163
Alignment:
| Q |
78 |
tatggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtg |
177 |
Q |
| |
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||||||||||||||||||||| || || ||||| || |||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||| |
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| T |
42991023 |
tatggtgcagttgtcatcacaagggccaactcacgacgaaattgattttgagttcttgggaaatgttagcggtaatccttacattctccacacaaacgtg |
42991122 |
T |
|
| Q |
178 |
ttttctcaaggcaaaggaaacagagaacaacaattctacct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42991123 |
ttttctcaaggcaaaggaaacagagaacaacaattctacct |
42991163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 221
Target Start/End: Original strand, 35017692 - 35017833
Alignment:
| Q |
80 |
tggtgcagttgtcatcacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgtt |
179 |
Q |
| |
|
|||| ||| ||||||| || ||||| || |||||||| ||||||||||||||||| ||||| ||||| || || || ||||| ||||||||| | || |
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|
| T |
35017692 |
tggtacagctgtcatcccaaggaccaacccatgatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatctt |
35017791 |
T |
|
| Q |
180 |
ttctcaaggcaaaggaaacagagaacaacaattctacctatg |
221 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||||||||| |
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|
| T |
35017792 |
cactcaaggtaaaggtaatagagaacaacaattctacctatg |
35017833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 53494981 - 53495082
Alignment:
| Q |
112 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
211 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||||| ||||| || || |||| ||| ||||| || ||||||| |||||| |||||||| ||||||||||||| |
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|
| T |
53494981 |
gatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaacaat |
53495080 |
T |
|
| Q |
212 |
tc |
213 |
Q |
| |
|
|| |
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|
| T |
53495081 |
tc |
53495082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 218
Target Start/End: Original strand, 53498939 - 53499045
Alignment:
| Q |
112 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
211 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||| | ||||| ||||| ||||| || ||||| || |||||| ||||||||||| |||||||| ||||||| |
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| T |
53498939 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtttagccaaggcaaaggtaacagagagcaacaat |
53499038 |
T |
|
| Q |
212 |
tctacct |
218 |
Q |
| |
|
| ||||| |
|
|
| T |
53499039 |
tttacct |
53499045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 221
Target Start/End: Original strand, 53502099 - 53502186
Alignment:
| Q |
134 |
taggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctatg |
221 |
Q |
| |
|
|||||||||| ||||| || || ||||| || ||||| || || || |||||||||||||||||| |||||||||||||| ||||| |
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| T |
53502099 |
taggaaatgtaagtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaacaattctatctatg |
53502186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 221
Target Start/End: Original strand, 37188574 - 37188683
Alignment:
| Q |
112 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
211 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| | ||||| || || |||||||| ||||| || |||||| ||||| ||||| |||||||| ||||||| |
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| T |
37188574 |
gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat |
37188673 |
T |
|
| Q |
212 |
tctacctatg |
221 |
Q |
| |
|
|||||||||| |
|
|
| T |
37188674 |
tctacctatg |
37188683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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