View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13057_low_2 (Length: 510)
Name: NF13057_low_2
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13057_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 353 - 488
Target Start/End: Original strand, 29148614 - 29148743
Alignment:
| Q |
353 |
agctaacattttaagaaatcaagtagtaaaaaatagtagcaacaataagattggaaaataagatgaagaaagatacaataaaaaatagtagcaacaatga |
452 |
Q |
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| T |
29148614 |
agctaatattttaagaaatcaagtagtaaaaaaa--tagca----taagagtcgaaaataagatgaagaaagatacaataaaaaatagtagcaacaatga |
29148707 |
T |
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| Q |
453 |
taaataaatggaactagcaatgagaggaagggagag |
488 |
Q |
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| T |
29148708 |
taaataaatggaaccagcaatgagaggaagggagag |
29148743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 333 - 488
Target Start/End: Original strand, 29151587 - 29151737
Alignment:
| Q |
333 |
aaccatgattttattcgttaagctaacattttaagaaatcaagtagtaaaaaatagtagcaacaataagattggaaaataagatgaagaaagatacaata |
432 |
Q |
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| T |
29151587 |
aaccatgatttcaatcatttagctaacattttaagaaatcaagtagtaaata-taatagca----taagattggaaaataagatgaagaaagatacaata |
29151681 |
T |
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| Q |
433 |
aaaaatagtagcaacaatgataaataaatggaactagcaatgagaggaagggagag |
488 |
Q |
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| T |
29151682 |
aaaaatagtagcaacaataataaacaaattgaaccagatacgcgaggaagggagag |
29151737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 29148307 - 29148368
Alignment:
| Q |
110 |
aaggggcataacctgtattggtggcaggggattcaggcattaatccaatcttagattttcta |
171 |
Q |
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| T |
29148307 |
aaggggcttaacctgtattggtggtaggggatttaggcatttatccaatcttagattttcta |
29148368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 34276701 - 34276761
Alignment:
| Q |
110 |
aaggggcataacctgtattggtggcaggggattcaggcattaatccaatcttagattttct |
170 |
Q |
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| T |
34276701 |
aaggggcttaacttgtattagtggcaggggatttaggcattattccaatcttagattttct |
34276761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 382
Target Start/End: Original strand, 24416640 - 24416685
Alignment:
| Q |
337 |
atgattttattcgttaagctaacattttaagaaatcaagtagtaaa |
382 |
Q |
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| T |
24416640 |
atgatttttatcattaagataacattttaagaaatcaagtagtaaa |
24416685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 24416729 - 24416766
Alignment:
| Q |
402 |
attggaaaataagatgaagaaagatacaataaaaaata |
439 |
Q |
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| T |
24416729 |
attgtaaaataagatgaagaaacatacaataaaaaata |
24416766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 34254844 - 34254799
Alignment:
| Q |
432 |
aaaaaatagtagcaacaatgataaataaatggaactagcaatgaga |
477 |
Q |
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| T |
34254844 |
aaaaaatagtagcaactatgataaacaaatggaaccagaaatgaga |
34254799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 485
Target Start/End: Original strand, 34277743 - 34277799
Alignment:
| Q |
429 |
aataaaaaatagtagcaacaatgataaataaatggaactagcaatgagaggaaggga |
485 |
Q |
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| T |
34277743 |
aataaaatatagtagcaataatgataaacaaattgaaccagatatgagaggaaggga |
34277799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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