View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13057_low_3 (Length: 448)
Name: NF13057_low_3
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13057_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 220 - 430
Target Start/End: Complemental strand, 5184158 - 5183947
Alignment:
| Q |
220 |
ttcggttgaaccaatcaaggttcaactcattcaagttagctaagttcaatgaaactacaatacaatcgcgatcaaatcaaccatcgaactggtcagttct |
319 |
Q |
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| T |
5184158 |
ttcggttgaaccaatcatggttcaactcattcaagttagccaagttcaatgaaactacaatacaatcgcgatcaaatcaaccatcgaactggtcagttct |
5184059 |
T |
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| Q |
320 |
cggttcaaaccgttgaagcggtccaatatttaaaacatgggtat-aaatatcttcatatgtttatctaccatgacttgtcaattaatgtgtgtttatata |
418 |
Q |
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| T |
5184058 |
cggttcaaacctttgaaccggtccaatatttaaaacatgggtataaaatatcttcatatgtttatctaccatgacttgtcaattaatgtgtgtttatata |
5183959 |
T |
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| Q |
419 |
caattcaaaaag |
430 |
Q |
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| T |
5183958 |
caattcaaaaag |
5183947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 5184373 - 5184191
Alignment:
| Q |
17 |
ctaaaatccaaaacatgtaaatgattggttgaattcttcatgtaatttcactttcatagagggcaatattgt------------atattaataatgtttc |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5184373 |
ctaaaatccaaaacatgtaaatgattggttgaattcttcatgtaatttcactttcatagagggcaatattgtcatgcaaaaagtatattaataatgtttc |
5184274 |
T |
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| Q |
105 |
taaaaccgaattaaaggtcaaaccaaagataccacctgtcgttgtttaattgggttaaatcgatgaaatcatgacaaatgatc |
187 |
Q |
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| T |
5184273 |
taaaaccgaattaaaggtcaaaccagagataccacctgtcgttgtttaatagggttaaatcgatgaaatcatgacaaatgatc |
5184191 |
T |
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