View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13057_low_7 (Length: 269)

Name: NF13057_low_7
Description: NF13057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13057_low_7
NF13057_low_7
[»] chr3 (2 HSPs)
chr3 (3-259)||(38213980-38214236)
chr3 (3-259)||(38218199-38218455)
[»] chr8 (3 HSPs)
chr8 (25-259)||(42991291-42991523)
chr8 (25-218)||(35017979-35018172)
chr8 (120-161)||(33811108-33811149)
[»] chr7 (4 HSPs)
chr7 (73-202)||(37188902-37189031)
chr7 (130-191)||(32715057-32715118)
chr7 (130-191)||(32709835-32709896)
chr7 (130-191)||(32718435-32718496)
[»] chr6 (2 HSPs)
chr6 (130-194)||(10411404-10411468)
chr6 (130-194)||(10379762-10379826)
[»] chr4 (6 HSPs)
chr4 (72-188)||(53492975-53493091)
chr4 (73-188)||(53499268-53499383)
chr4 (89-162)||(53495378-53495451)
chr4 (94-180)||(53488672-53488758)
chr4 (91-161)||(53502408-53502478)
chr4 (73-188)||(52591013-52591128)
[»] chr2 (2 HSPs)
chr2 (94-185)||(16942656-16942747)
chr2 (94-185)||(17013321-17013412)
[»] chr1 (1 HSPs)
chr1 (120-161)||(47495928-47495969)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 38214236 - 38213980
Alignment:
Q  3 ctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaac 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214236 ctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaac 38214137  T
Q  103 caaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagctt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214136 caaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagctt 38214037  T
Q  203 actaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214036 actaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 38213980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 259
Target Start/End: Complemental strand, 38218455 - 38218199
Alignment:
Q  3 ctaacaagttcatgtaactaaatgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaac 102  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218455 ctaacaagttcatgtaactaattgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaac 38218356  T
Q  103 caaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagctt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218355 caaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagctt 38218256  T
Q  203 actaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38218255 actaccgcaatttcaaagctactgagttatcttctgtctcttccacttccttctctg 38218199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 42991291 - 42991523
Alignment:
Q  25 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 124  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||    
T  42991291 tgcagattcttggttgacaacatcccaataaggatcttcaagaatgctgaatctattagtattcctttcccaaagaaccaaccgatgagaatatattcaa 42991390  T
Q  125 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaaagctac 224  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42991391 gtctttggaacgctgaagattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccatttacagcttactaccgcaatttcaaagctac 42991490  T
Q  225 tgagttatcttctgtctcttccacttccttctctg 259  Q
    ||| |||||  ||||||||||||||||||||||||    
T  42991491 tgaattatc--ctgtctcttccacttccttctctg 42991523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 35017979 - 35018172
Alignment:
Q  25 tgcagatttttggttgacaacaccccaataaggatcttcaagaatgctgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaa 124  Q
    |||||||| |||||||| ||||  ||||||||| | |||||||||| |||||| |||||| |||| || ||||||||||||||||||||||||||||| |    
T  35017979 tgcagattcttggttgataacatgccaataagggtattcaagaatgttgaatctattggtgttccttttccaaagaaccaaccaatgagaatctattcca 35018078  T
Q  125 gtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctttacagcttactaccgcaatttcaa 218  Q
    | || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  35018079 gcctgtggaatgctgatgattgggccacaagaggtggattggtgaaaactgattggtccaaagcaccctttacagcatactaccgtaatttcaa 35018172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 33811149 - 33811108
Alignment:
Q  120 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 161  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  33811149 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 33811108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 37188902 - 37189031
Alignment:
Q  73 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 172  Q
    ||||||| |||| |||||||||| || | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||  | || || |    
T  37188902 gaatcaaatggtgttccattccccaaaagccaaccaatgagaatctattctagtctttggaatgctgatgattgggctacaagaggtggacttgttaaga 37189001  T
Q  173 ctgattggtccaaagcaccctttacagctt 202  Q
    | ||||||||||| || || ||||| ||||    
T  37189002 cagattggtccaatgctccttttactgctt 37189031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 32715057 - 32715118
Alignment:
Q  130 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 191  Q
    |||||||| ||||||||||| |||||||||||||||| |||||| |||||||| ||||||||    
T  32715057 tggaatgcagatgattgggccacaagaggtggtttggagaaaacagattggtcaaaagcacc 32715118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 32709835 - 32709896
Alignment:
Q  130 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 191  Q
    |||||||| ||||||||||| ||||||||||| || | |||||| |||||||||||||||||    
T  32709835 tggaatgcagatgattgggcaacaagaggtggattagagaaaacagattggtccaaagcacc 32709896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 32718435 - 32718496
Alignment:
Q  130 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcacc 191  Q
    |||||||| ||||||||||| ||||| ||||| || |  |||||||||||||| ||||||||    
T  32718435 tggaatgcagatgattgggccacaaggggtggattagaaaaaactgattggtcaaaagcacc 32718496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 10411404 - 10411468
Alignment:
Q  130 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 194  Q
    |||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  10411404 tggaatgctgatgattgggctacaaggggtggtttggagaaaacagattggtccaaagcaccctt 10411468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 10379826 - 10379762
Alignment:
Q  130 tggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaaagcaccctt 194  Q
    |||||||||||||||||||| ||||| |||||||| | |||||| ||||||||||||||||||||    
T  10379826 tggaatgctgatgattgggccacaaggggtggtttagagaaaacagattggtccaaagcaccctt 10379762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 72 - 188
Target Start/End: Original strand, 53492975 - 53493091
Alignment:
Q  72 tgaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaa 171  Q
    |||||||| |||  |||||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || ||     
T  53492975 tgaatcaagtggcgttccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaag 53493074  T
Q  172 actgattggtccaaagc 188  Q
    || ||||||||||||||    
T  53493075 acagattggtccaaagc 53493091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 53499268 - 53499383
Alignment:
Q  73 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 172  Q
    ||||||| |||| | |||||||| || |||||||||||||| || || ||||||||||||||||||||||||||||| |||||||| ||  | || || |    
T  53499268 gaatcaaatggtgtaccattccccaaaaaccaaccaatgaggatatactcaagtctctggaatgctgatgattgggcaacaagaggaggacttgttaaga 53499367  T
Q  173 ctgattggtccaaagc 188  Q
    | ||||||||||||||    
T  53499368 cagattggtccaaagc 53499383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 53495378 - 53495451
Alignment:
Q  89 cattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggt 162  Q
    |||| |||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||    
T  53495378 catttccaaagaatcaaccaatgaggatatattcaagtctatggaatgctgatgattgggcaacaagaggtggt 53495451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 53488758 - 53488672
Alignment:
Q  94 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattgg 180  Q
    |||||||| || ||||||||| | ||||||||||| |||||||| ||||||||||| |||||||||||| | |||||||| ||||||    
T  53488758 ccaaagaagcagccaatgagattatattcaagtctatggaatgccgatgattgggcaacaagaggtggtcttgtgaaaacagattgg 53488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 53502408 - 53502478
Alignment:
Q  91 ttcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtgg 161  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||| ||| | ||||| |||||||||||    
T  53502408 ttcccaaagaaccaaccaatgagaatatattcaagtttgtggaatgcagataactgggcaacaagaggtgg 53502478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 52591013 - 52591128
Alignment:
Q  73 gaatcaattggtattccattcccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaa 172  Q
    |||||||  |||||||| || || || | |||| ||||||| || ||||||||||| ||| |||| ||| ||||||| ||||| || ||| | | |||||    
T  52591013 gaatcaaaaggtattccttttcctaaaagccaagcaatgagtatatattcaagtctttgggatgcagataattgggccacaaggggaggtctagcgaaaa 52591112  T
Q  173 ctgattggtccaaagc 188  Q
    ||||||||||| ||||    
T  52591113 ctgattggtcccaagc 52591128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 16942656 - 16942747
Alignment:
Q  94 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 185  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  16942656 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 16942747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 17013321 - 17013412
Alignment:
Q  94 ccaaagaaccaaccaatgagaatctattcaagtctctggaatgctgatgattgggctacaagaggtggtttggtgaaaactgattggtccaa 185  Q
    |||||||||||| | ||||| || ||||||||||| |||||||| ||| ||||||| || ||||||||  | |||||||| |||||| ||||    
T  17013321 ccaaagaaccaagccatgaggatatattcaagtctttggaatgcagataattgggccactagaggtgggattgtgaaaacagattggaccaa 17013412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 47495928 - 47495969
Alignment:
Q  120 ttcaagtctctggaatgctgatgattgggctacaagaggtgg 161  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  47495928 ttcaagtgtatggaatgcagatgattgggctacaagaggtgg 47495969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University