View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13058_low_1 (Length: 375)

Name: NF13058_low_1
Description: NF13058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13058_low_1
NF13058_low_1
[»] chr6 (13 HSPs)
chr6 (20-360)||(33305125-33305465)
chr6 (21-355)||(33286192-33286526)
chr6 (21-355)||(33263281-33263618)
chr6 (93-353)||(31561987-31562247)
chr6 (93-249)||(33401373-33401529)
chr6 (83-335)||(9167433-9167685)
chr6 (127-355)||(33058209-33058438)
chr6 (138-355)||(33359364-33359579)
chr6 (103-355)||(33272450-33272698)
chr6 (93-262)||(33643783-33643956)
chr6 (83-276)||(33388770-33388960)
chr6 (143-240)||(33410701-33410798)
chr6 (258-357)||(33410604-33410703)
[»] chr2 (1 HSPs)
chr2 (93-307)||(17440001-17440216)
[»] scaffold1408 (1 HSPs)
scaffold1408 (95-245)||(1385-1535)
[»] scaffold0428 (1 HSPs)
scaffold0428 (95-245)||(7131-7281)
[»] chr4 (8 HSPs)
chr4 (93-248)||(31503304-31503459)
chr4 (93-159)||(31498070-31498136)
chr4 (127-243)||(31157992-31158108)
chr4 (109-186)||(31478170-31478247)
chr4 (127-184)||(31484023-31484080)
chr4 (102-186)||(31527234-31527318)
chr4 (127-186)||(31149175-31149234)
chr4 (205-243)||(31491076-31491114)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 33305465 - 33305125
Alignment:
Q  20 gtgtcaaaaatggataatcttagagtcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatatgttgatt 119  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305465 gtgtcaaaaatgaataatcttagattcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatatgttgatt 33305366  T
Q  120 ggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305365 ggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaa 33305266  T
Q  220 caagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtattttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33305265 caagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtattttt 33305166  T
Q  320 gtttgttttacatgtcccagtatctgcccaatttgaaacat 360  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33305165 gtttgttttacatgtcccagtatctgcccaatttgaaacat 33305125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 33286526 - 33286192
Alignment:
Q  21 tgtcaaaaatggataatcttagagtcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatatgttgattg 120  Q
    |||||||||||  |||||||||| | |||||| ||| ||  |||| |   ||||| ||||| | || |||| ||||||||||||||| ||||||| | ||    
T  33286526 tgtcaaaaatgagtaatcttagattgctcatcatcatgtggggtgtgaatatctccggaagcctattgagtctttcaaacaaattaagatatgttcagtg 33286427  T
Q  121 gcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaac 220  Q
    |  || ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||  | || ||||| ||| |||||||||||| |||     
T  33286426 gactggatatcctttcaaatatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgcatagtagcaacattaaacaactatggagaaag 33286327  T
Q  221 aagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtatttttg 320  Q
    |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| | | ||||| |||| | |  |||||||    
T  33286326 aagaaggtactataaattatcttattataaatgttcatcttagaaatataaacaaatttgaaacaattctcttaaaatcaaattaatggctccatttttg 33286227  T
Q  321 tttgttttacatgtcccagtatctgcccaatttga 355  Q
    |||||||| ||| |  |||||||| ||||||||||    
T  33286226 tttgtttttcatattacagtatcttcccaatttga 33286192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 355
Target Start/End: Complemental strand, 33263618 - 33263281
Alignment:
Q  21 tgtcaaaaatggataatcttagagtcctcatcttcaagtacggtgggtgcatctcaggaagtccatggagtttttcaaacaaattaaaatatgttgattg 120  Q
    |||||||||||  |||||||||| | |||||| ||| ||||||   ||  ||||||||||| ||| |  || ||||||||||||| | ||||||||| ||    
T  33263618 tgtcaaaaatgagtaatcttagattgctcatcatcaggtacggaatgtatatctcaggaagcccaagttgtctttcaaacaaattgagatatgttgagtg 33263519  T
Q  121 gcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaac 220  Q
    | ||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||   ||  ||||| |||  ||||||||||| ||||    
T  33263518 ggatgaatatccttcaaagtatttgccatcaagttttcaccccaatgaacttgtagaattgatcttggtgaaaagcaacattacacaactatggaaaaac 33263419  T
Q  221 aagaaggtactataaattctcttattattaatgt---ttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtattt 317  Q
    |||||||||||||||||||||||||||||||| |   | ||||||||||||||| |||| | ||||||||| ||| ||| |||||||||| | | |||||    
T  33263418 aagaaggtactataaattctcttattattaatattcatcatcttagaaatataaccaaattcgaaacaattctcttataatcaaagtaatggctctattt 33263319  T
Q  318 ttgtttgttttacatgtcccagtatctgcccaatttga 355  Q
    || ||  || | |||||| |||||||||||||||||||    
T  33263318 ttattgtttattcatgtcacagtatctgcccaatttga 33263281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 93 - 353
Target Start/End: Original strand, 31561987 - 31562247
Alignment:
Q  93 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 192  Q
    |||| |||||||||| ||||||||| |||| |||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||   |||    
T  31561987 tttcgaacaaattaagatatgttgagtggcttgaatatcctttcaagtatttgccatcaagttttcacccctatgaacttgtagaattgatcttggcgag 31562086  T
Q  193 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatct 292  Q
     ||||  |||   |||||||||||||||||||||||||| |||||| ||||||||||| |  ||||||||||| |||||||||| | |||||||||||||    
T  31562087 aagcagcattacgcaactatggacaaacaagaaggtactgtaaattatcttattattactaattatcttagaactataaacaaattagaaacaattatct 31562186  T
Q  293 catagtcaaagtaattggtgtatttttgtttgttttacatgtcccagtatctgcccaattt 353  Q
      || |||||||||| | | ||||||||||||||||  ||||| |||||||| ||||||||    
T  31562187 tttaatcaaagtaatggctctatttttgtttgttttttatgtcacagtatcttcccaattt 31562247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 93 - 249
Target Start/End: Complemental strand, 33401529 - 33401373
Alignment:
Q  93 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 192  Q
    |||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||   | |    
T  33401529 tttcaaacgaattaagatatgttgattggcatgaatatcctttcaagtatttgccaacaagttttcaccccaatgaacttgtagaattgatcttgtggtg 33401430  T
Q  193 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattatt 249  Q
     ||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  33401429 tagcaacattaaacaactatggaaaaacaagaaggtactataaattctcttattatt 33401373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 83 - 335
Target Start/End: Complemental strand, 9167685 - 9167433
Alignment:
Q  83 ccatggagtttttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattga 182  Q
    ||||| ||| |||| ||| |||||| |||| |||| ||| ||  ||||||||| |||||||||||||| | ||||||| |||||||||||||| || |||    
T  9167685 ccatgtagtctttcgaacgaattaagatatcttgagtggtatcgatatcctttcaagtatttgccatcgagttttcacgccaatgaacttgtacaactga 9167586  T
Q  183 tcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaaattgaa 282  Q
    |||| ||  | ||||| ||| |||||||||||| |||||| ||||||||||||| |||||||||||||  |||||| ||||||||||||||||| | |||    
T  9167585 tcttgaactggagcaacattaaacaactatggaaaaacaaaaaggtactataaactctcttattattaccgtttattttagaaatataaacaaattcgaa 9167486  T
Q  283 acaattatctcatagtcaaagtaattggtgtatttttgtttgttttacatgtc 335  Q
    |||||| ||| | | |||||||||| | | |||||||||| ||||| ||||||    
T  9167485 acaattttcttacaatcaaagtaatggctctatttttgttggtttttcatgtc 9167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 127 - 355
Target Start/End: Complemental strand, 33058438 - 33058209
Alignment:
Q  127 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaag 226  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |   ||||| ||| |||||||||||| ||||||||||    
T  33058438 atatccttccaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttgacggagagcaacattaaacaactatggaaaaacaagaag 33058339  T
Q  227 gtactataaattctcttattattaatgttt---atcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtatttttgttt 323  Q
    |||||||||||||| ||||||||||| |||   |||||||||||||||||||| |  |||||||| ||| | | ||||||||||  |  ||  ||||||     
T  33058338 gtactataaattctattattattaatatttatcatcttagaaatataaacaaattcaaaacaattctcttacaatcaaagtaat--ggctaactttgttg 33058241  T
Q  324 gttttacatgtcccagtatctgcccaatttga 355  Q
    ||||| || ||| |||||||| ||||||||||    
T  33058240 gtttttcacgtcacagtatcttcccaatttga 33058209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 355
Target Start/End: Complemental strand, 33359579 - 33359364
Alignment:
Q  138 agtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaat 237  Q
    ||||||||||| ||| |||| || ||||||||||||||||||||||||| ||||  ||||  ||| |||||||||||| ||||||||||||| |||||||    
T  33359579 agtatttgccaacaagttttaactccaatgaacttgtagaattgatcttgaagaaaagcagcattaaacaactatggaaaaacaagaaggtaatataaat 33359480  T
Q  238 tctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtatttttgtttgttttacatgtccc 337  Q
    ||||||||||||||||||||| |||||||||||||| || |  ||| ||||||||  || |||||| || || | || ||||||| ||||| |||||| |    
T  33359479 tctcttattattaatgtttattttagaaatataaaccaattgaaaataattatcttttaatcaaagcaa-tgctctagttttgttggtttt-catgtcac 33359382  T
Q  338 agtatctgcccaatttga 355  Q
    ||||||| ||||||||||    
T  33359381 agtatcttcccaatttga 33359364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 103 - 355
Target Start/End: Complemental strand, 33272698 - 33272450
Alignment:
Q  103 attaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaatt 202  Q
    ||||| ||||||||| ||| ||| ||||||||| |||| | | ||| ||| ||||||||||||||| ||| ||||||||||||| | ||  ||| | ||     
T  33272698 attaagatatgttgagtgggatggatatcctttcaagtgtctaccaacaagttttcaccccaatgaccttatagaattgatcttgatgaatagcgacatc 33272599  T
Q  203 gaacaactatggacaaacaagaaggtac-tataaattctcttattattaatgtttatcttagaaatataaacaaaattgaaacaattatctcatagtcaa 301  Q
     |||||||||||| |||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||| ||| | | ||||    
T  33272598 aaacaactatggaaaaacaagaaggtacctataaattct---attattaatgtttatcttagaaatataaacaaatttgaaacaattctcttagaatcaa 33272502  T
Q  302 agtaattggtgtatttttgtttgttttacatgtcccagtatctgcccaatttga 355  Q
     ||||| | | ||||||||||  |||| |||||  |||||||| ||||||||||    
T  33272501 tgtaatggttctatttttgttattttttcatgt--cagtatcttcccaatttga 33272450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 262
Target Start/End: Original strand, 33643783 - 33643956
Alignment:
Q  93 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 192  Q
    |||||||  |||||| ||||||||| ||||||   |||||||| | || |||||||||||||||||| |||||| |||||||||||||| |||| ||||     
T  33643783 tttcaaaggaattaagatatgttgactggcatatgtatcctttcatgtgtttgccatcaaattttcagcccaatcaacttgtagaattgttcttgaagaa 33643882  T
Q  193 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctct----tattattaatgtttatctta 262  Q
     ||||| |||  ||||||||||| ||||||||||||| ||||||||||||    ||||||||||||||||||||    
T  33643883 gagcaacattagacaactatggaaaaacaagaaggtaatataaattctcttatatattattaatgtttatctta 33643956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 276
Target Start/End: Complemental strand, 33388960 - 33388770
Alignment:
Q  83 ccatggagtttttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattga 182  Q
    |||| |||| ||||||||| ||||| ||||||||| ||| || | |||||||| |||||||||||||||| ||||||||||| ||| |||||||| ||||    
T  33388960 ccatcgagtctttcaaacacattaagatatgttgagtggaattattatcctttcaagtatttgccatcaagttttcaccccagtgatcttgtagagttga 33388861  T
Q  183 tcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattattaatgtttatcttagaaatataaacaaa 276  Q
    |||| | |   ||| | ||  ||||||||||||  |||||||||||| |||| |||   | |||||||||||||||||||||||||||||||||    
T  33388860 tcttgatgtatagcgacatcaaacaactatggaagaacaagaaggtattatacatt---tgattattaatgtttatcttagaaatataaacaaa 33388770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 240
Target Start/End: Complemental strand, 33410798 - 33410701
Alignment:
Q  143 ttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaaggtactataaattct 240  Q
    ||||||| || ||||||||| ||||||||||| ||||||||||| ||||  ||||   |  |||||||||||| || |||||||||||||||||||||    
T  33410798 ttgccattaagttttcaccctaatgaacttgttgaattgatcttgaagaatagcagcttcaaacaactatggaaaagcaagaaggtactataaattct 33410701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 357
Target Start/End: Complemental strand, 33410703 - 33410604
Alignment:
Q  258 tcttagaaatataaacaaaattgaaacaattatctcatagtcaaagtaattggtgtatttttgtttgttttacatgtcccagtatctgcccaatttgaaa 357  Q
    ||||||| ||||||||||| |  |||||||| | | ||| ||||||||||   | |||||||||||| ||| |||||| |||||| | ||||||||||||    
T  33410703 tcttagagatataaacaaattcaaaacaattctgttataatcaaagtaatgtctctatttttgtttgcttttcatgtcacagtattttcccaatttgaaa 33410604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 93 - 307
Target Start/End: Original strand, 17440001 - 17440216
Alignment:
Q  93 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 192  Q
    |||| |||||||||| ||||||||| |||| | |||||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||| ||  |  |    
T  17440001 tttcgaacaaattaagatatgttgagtggcctaaatatcctttcaagtatttgccaacaagttttcaccccaatgaactagtagaattgattttggatgg 17440100  T
Q  193 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttatt-attaatgtttatcttagaaatataaacaaaattgaaacaattatc 291  Q
     ||||| ||| || | ||||||| |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||| ||    
T  17440101 gagcaacattaaaaacctatggaaaaacaagaaggtaccataaattctcttattaattaatgtttatctttgaaatataaacaaattcgaaacaattttc 17440200  T
Q  292 tcatagtcaaagtaat 307  Q
    | ||| |||| |||||    
T  17440201 ttataatcaatgtaat 17440216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 1535 - 1385
Alignment:
Q  95 tcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagca 194  Q
    ||||||||||||  ||||||| | |||  || ||||||||| |||||| ||||||||| |||||||||   |||||||||||||||||| ||   ||| |    
T  1535 tcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaa 1436  T
Q  195 gcaaaattgaacaactatggacaaacaagaaggtactataaattctcttat 245  Q
    ||   ||| |||||||||||| |||||||||||||||||||||||||||||    
T  1435 gctgcattaaacaactatggaaaaacaagaaggtactataaattctcttat 1385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 95 - 245
Target Start/End: Complemental strand, 7281 - 7131
Alignment:
Q  95 tcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagca 194  Q
    ||||||||||||  ||||||| | |||  || ||||||||| |||||| ||||||||| |||||||||   |||||||||||||||||| ||   ||| |    
T  7281 tcaaacaaattacgatatgttcaatggactggatatcctttcaagtatctgccatcaagttttcaccctgctgaacttgtagaattgattttggtgagaa 7182  T
Q  195 gcaaaattgaacaactatggacaaacaagaaggtactataaattctcttat 245  Q
    ||   ||| |||||||||||| |||||||||||||||||||||||||||||    
T  7181 gctgcattaaacaactatggaaaaacaagaaggtactataaattctcttat 7131  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 248
Target Start/End: Original strand, 31503304 - 31503459
Alignment:
Q  93 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagag 192  Q
    |||| ||| |||||| ||||||||| |||  |||||||||||| ||||||||||| |||| |||||| || ||| ||||||| || |||||||| |||||    
T  31503304 tttctaacgaattaagatatgttgaatggagtgaatatcctttcaagtatttgccgtcaagttttcagccaaatcaacttgttgagttgatcttgaagag 31503403  T
Q  193 cagcaaaattgaacaactatggacaaacaagaaggtactataaattctcttattat 248  Q
     ||||  || |||||| |||||  | ||||||||||||| ||||| |||| |||||    
T  31503404 tagcagcatcgaacaattatgggaagacaagaaggtactctaaatcctctaattat 31503459  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 31498070 - 31498136
Alignment:
Q  93 tttcaaacaaattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttca 159  Q
    |||| |||||||||| |||| |||| ||||||||||||||||| | |||||| ||||||||||||||    
T  31498070 tttccaacaaattaagatattttgagtggcatgaatatcctttcatgtatttaccatcaaattttca 31498136  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 243
Target Start/End: Complemental strand, 31158108 - 31157992
Alignment:
Q  127 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatcttaaagagcagcaaaattgaacaactatggacaaacaagaag 226  Q
    ||||||||| |||||||||||| ||  |||||| |||||| ||||||| ||||||||| | | |   ||||   |  |||||||||||| | ||||||||    
T  31158108 atatcctttcaagtatttgccagcatgttttcagcccaatcaacttgttgaattgatcatgaggcatagcagcgtcaaacaactatggaaagacaagaag 31158009  T
Q  227 gtactataaattctctt 243  Q
    |||||||||||||||||    
T  31158008 gtactataaattctctt 31157992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 31478170 - 31478247
Alignment:
Q  109 atatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatctt 186  Q
    ||||||||| |||  |||||||||||| |||||||||||||| | |||| || | ||| ||||||| |||||||||||    
T  31478170 atatgttgagtggagtgaatatcctttcaagtatttgccatcgagttttgactctaatcaacttgttgaattgatctt 31478247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 31484023 - 31484080
Alignment:
Q  127 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatc 184  Q
    ||||||||| | ||||||||||||||||||||  |||||| ||||||| |||||||||    
T  31484023 atatcctttcatgtatttgccatcaaattttcggcccaatcaacttgttgaattgatc 31484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 31527318 - 31527234
Alignment:
Q  102 aattaaaatatgttgattggcatgaatatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatctt 186  Q
    |||||| ||||||||| ||||  ||||||||||| | |||||||||||||| |||||| ||| |  ||||||| || ||||||||    
T  31527318 aattaagatatgttgagtggcgggaatatcctttcatgtatttgccatcaagttttcaaccctaccaacttgttgagttgatctt 31527234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 31149234 - 31149175
Alignment:
Q  127 atatccttttaagtatttgccatcaaattttcaccccaatgaacttgtagaattgatctt 186  Q
    ||||||||| |||||||||||||||| |||||  || ||| ||||||| |||||||||||    
T  31149234 atatcctttcaagtatttgccatcaagttttctgcctaatcaacttgtcgaattgatctt 31149175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Original strand, 31491076 - 31491114
Alignment:
Q  205 acaactatggacaaacaagaaggtactataaattctctt 243  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  31491076 acaactatggaaagacaagaaggtactataaattctctt 31491114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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