View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13058_low_2 (Length: 312)

Name: NF13058_low_2
Description: NF13058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13058_low_2
NF13058_low_2
[»] chr5 (3 HSPs)
chr5 (1-294)||(9334242-9334526)
chr5 (1-89)||(20900397-20900485)
chr5 (182-258)||(25893875-25893951)
[»] chr7 (4 HSPs)
chr7 (1-295)||(43365114-43365419)
chr7 (1-60)||(7412038-7412097)
chr7 (1-80)||(30235914-30235993)
chr7 (224-294)||(28443326-28443396)
[»] chr6 (8 HSPs)
chr6 (1-294)||(18766555-18766839)
chr6 (1-80)||(9847620-9847699)
chr6 (183-262)||(32327710-32327789)
chr6 (183-262)||(34710786-34710865)
chr6 (183-258)||(4187615-4187690)
chr6 (224-294)||(14115641-14115711)
chr6 (224-294)||(14121791-14121861)
chr6 (182-258)||(4737607-4737683)
[»] chr1 (2 HSPs)
chr1 (9-294)||(9316804-9317080)
chr1 (1-89)||(21818553-21818642)
[»] chr4 (8 HSPs)
chr4 (3-295)||(40975694-40975987)
chr4 (195-294)||(54300848-54300947)
chr4 (1-80)||(49358680-49358759)
chr4 (1-80)||(52182242-52182321)
chr4 (182-258)||(37367538-37367614)
chr4 (183-264)||(30239138-30239219)
chr4 (182-258)||(27591229-27591305)
chr4 (1-81)||(54300672-54300751)
[»] scaffold1487 (1 HSPs)
scaffold1487 (1-294)||(1148-1443)
[»] chr3 (6 HSPs)
chr3 (2-155)||(27901982-27902135)
chr3 (168-294)||(27901401-27901527)
chr3 (1-80)||(24705818-24705897)
chr3 (195-262)||(9576263-9576330)
chr3 (224-294)||(18867663-18867734)
chr3 (182-258)||(24179991-24180067)
[»] scaffold0265 (1 HSPs)
scaffold0265 (1-89)||(14167-14256)
[»] scaffold0045 (1 HSPs)
scaffold0045 (224-290)||(2008-2074)
[»] scaffold0510 (1 HSPs)
scaffold0510 (197-262)||(1938-2003)
[»] chr8 (2 HSPs)
chr8 (183-262)||(36020965-36021044)
chr8 (182-258)||(36424957-36425033)
[»] chr2 (2 HSPs)
chr2 (1-80)||(11908948-11909026)
chr2 (183-262)||(43268774-43268853)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 9334242 - 9334526
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaaagtcaa 100  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9334242 cctattacgctttttatatcttactctatccatttgtgcaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaaagtcaa 9334341  T
Q  101 cttgccatggcaagtgatctacctgccatggcaag--tgatttactcgcgaggcgagtagaggcagagagtaccagaagcaactcgccaccaacctgcca 198  Q
    |||||||||||||||||  |||  || | ||| ||  |||          ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9334342 cttgccatggcaagtgaattactcgcga-ggcgagcatga----------aggcgagtagaggcagagagtaccagaagcaactcgccaccaaccggcca 9334430  T
Q  199 tggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggcagaaa 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||| |||||||||||||||    
T  9334431 tggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaaactgacgtggcagaaa 9334526  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 20900485 - 20900397
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtg 89  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||    
T  20900485 cctattacgctttttatatcttactctacccatttgtgtaggaattgaatgtcaagacactaagaaaaaatgaaaaacaagaatttgtg 20900397  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 25893875 - 25893951
Alignment:
Q  182 tcgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagtta 258  Q
    |||||||||||  || |||||||||  ||||||||  |||| |||||||||||   ||| |||||||||||||||||    
T  25893875 tcgccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagtta 25893951  T

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Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 43365419 - 43365114
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaaagtcaa 100  Q
    |||||||||||||||| || |||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43365419 cctattacgctttttacatcttactctatccatttgtgcaggaattgaatgtcaagacactaagaaagaaagagaaacaaggatttgtgaaaaaagtcaa 43365320  T
Q  101 cttgccatggcaagtgatctacctgccatggcaagtgatttactcgcga-----------ggcgagtagaggcagagagtaccagaagcaactcgccacc 189  Q
    |||| |||| |||||||||||| ||||||| || |||| ||||||||||           |||||||| |||||||||||||||||||||||||||||||    
T  43365319 cttgtcatgtcaagtgatctacttgccatgacacgtgaattactcgcgacgcgagttcaaggcgagtataggcagagagtaccagaagcaactcgccacc 43365220  T
Q  190 aacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggc 289  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||| |||| ||||||||||    
T  43365219 aacctgccatggcgagttcaaagcaagctaacttgccatggcgagcaaaattactcgccaggcgagttaagacggcctaatccttcaaaactgacgtggc 43365120  T
Q  290 agaaat 295  Q
    ||||||    
T  43365119 agaaat 43365114  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7412038 - 7412097
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacac 60  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  7412038 cctattacgctttttatatcttactttatccatttgtgtaggaattgaatgtcaagacac 7412097  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 30235914 - 30235993
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaa 80  Q
    ||||||| ||||||||||  | ||| |||||||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  30235914 cctattatgctttttatacatcactttatccatttgtgaaggaattgaatagcaagacactaagcaagaaagaaaaacaa 30235993  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 28443396 - 28443326
Alignment:
Q  224 gccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatc-ctgcaaagctgacgtggcagaaa 294  Q
    |||||||||||||||| ||||||||||||||| |||||| || ||| | || | ||||||||||||||||||    
T  28443396 gccatggcgagcaaaactactcgcgaggcgagctaaggcggcctaacctcttc-aagctgacgtggcagaaa 28443326  T

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Target: chr6 (Bit Score: 178; Significance: 5e-96; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 18766839 - 18766555
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaaagtcaa 100  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18766839 cctattatgctttttatatcttactctatccatttgtgcaggaattgaatgtcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaatgtcaa 18766740  T
Q  101 cttgccatggcaagtgatctacctgccatggcaag--tgatttactcgcgaggcgagtagaggcagagagtaccagaagcaactcgccaccaacctgcca 198  Q
    |||||||||||||||||  |||  || | ||| ||  |||          ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18766739 cttgccatggcaagtgaattactcgcga-ggcgagcatga----------aggcgagtagaggcagagagtaccagaagcagctcgccaccaacctgcca 18766651  T
Q  199 tggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggcagaaa 294  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  18766650 tggcgagttcaaggcgagctaacgtgccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 18766555  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 9847699 - 9847620
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaa 80  Q
    |||||||| |||| ||||| ||||| |||||||||||| ||||||| ||| ||||||||| ||||||  |||||||||||    
T  9847699 cctattacactttatatatcttactttatccatttgtggaggaattaaatgtcaagacaccaagaaaagaagaaaaacaa 9847620  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 32327710 - 32327789
Alignment:
Q  183 cgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggc 262  Q
    ||||||||||  || |||||||||  |||||||||| ||| ||||||||||| | ||| ||||||||||||||| |||||    
T  32327710 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtagaatgactcgcgaggcgagtgaaggc 32327789  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 34710786 - 34710865
Alignment:
Q  183 cgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggc 262  Q
    |||||||||| ||| |||||||||  |||||||||| ||| |||||||||||   ||| ||||||||||||||| |||||    
T  34710786 cgccaccaacttgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggc 34710865  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 4187690 - 4187615
Alignment:
Q  183 cgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagtta 258  Q
    ||||||||||  || |||||||||  |||||||||| ||| |||||||||||   ||| |||||||||||||||||    
T  4187690 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtta 4187615  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 14115641 - 14115711
Alignment:
Q  224 gccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatc-ctgcaaagctgacgtggcagaaa 294  Q
    |||||||||||||||| ||||||||||||||| |||||| || ||| | || | ||||||||||||||||||    
T  14115641 gccatggcgagcaaaactactcgcgaggcgagctaaggcggcctaacctcttc-aagctgacgtggcagaaa 14115711  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 14121791 - 14121861
Alignment:
Q  224 gccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatc-ctgcaaagctgacgtggcagaaa 294  Q
    |||||||||||||||| ||||||||||||||| |||||| || ||| | || | ||||||||||||||||||    
T  14121791 gccatggcgagcaaaactactcgcgaggcgagctaaggcggcctaacctcttc-aagctgacgtggcagaaa 14121861  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 4737607 - 4737683
Alignment:
Q  182 tcgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagtta 258  Q
    |||||||||||  || ||||| |||  ||||||||| |||| |||||||||||   ||| |||||||||||||||||    
T  4737607 tcgccaccaactcgcaatggctagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtta 4737683  T

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Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 9 - 294
Target Start/End: Complemental strand, 9317080 - 9316804
Alignment:
Q  9 gctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaaagtcaacttgccat 108  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9317080 gctttttatatcttactctatccatttgtgcaggaattgaatgtcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaacgtcaacttgccat 9316981  T
Q  109 ggcaagtgatctacctgccatggcaag--tgatttactcgcgaggcgagtagaggcagagagtaccagaagcaactcgccaccaacctgccatggcgagt 206  Q
    |||||||||  |||  || | ||| ||  |||          ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9316980 ggcaagtgaattactcgcga-ggcgagcatga----------aggcgagtagaggcagagagtaccagaagcaactcgccaccaacctgccatggtgagt 9316892  T
Q  207 tcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggcagaaa 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  9316891 tcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 9316804  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21818642 - 21818553
Alignment:
Q  1 cctattacgcttttt-atattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtg 89  Q
    ||||||||||||||| |||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||  ||||||||| |||||||    
T  21818642 cctattacgcttttttatatcttactctacccatttgtgcaggaattgaatgtcaagacactaagaaagaattaaaaacaagaatttgtg 21818553  T

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Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 40975694 - 40975987
Alignment:
Q  3 tattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaaagtcaact 102  Q
    |||||| |||||||||| |||||||||||||||||| ||||||||||  |||||||||||| |||||||||||||||||| ||||||||||| |||||||    
T  40975694 tattacactttttatatcttactctatccatttgtgcaggaattgaacgtcaagacactaaaaaagaaagaaaaacaagggtttgtgaaaaa-gtcaact 40975792  T
Q  103 tgccatggcaagtgatctacctgccatggcaag--tgat--ttactcgcgaggcgagtagaggcagagagtaccagaagcaactcgccaccaacctgcca 198  Q
    ||||||||| |||||  |||  || | ||| ||  |||   | | |  | ||| ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  40975793 tgccatggcgagtgaattactcgcga-ggcgagcatgaagatgagtt-caaggtgagtagaagcagagagtaccagaggcaactcgccaccaacctgcca 40975890  T
Q  199 tggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggcagaaat 295  Q
    ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||   ||||||||||||||||||||    
T  40975891 tggtgagttcatggcgagctaacttgccatggcgagtaaaattactcgcgaggcgagttaaggcggcctaatcccttaaagctgacgtggcagaaat 40975987  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 54300848 - 54300947
Alignment:
Q  195 gccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggcagaaa 294  Q
    |||||||| |||| |||||||||||||||||||||  ||| ||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  54300848 gccatggcaagttgaaggcgagctaacttgccatgatgagaaaaattactcgcgaggcgagttaaggcggcctaatccttcaaagctgacgtggcagaaa 54300947  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 49358680 - 49358759
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaa 80  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||    
T  49358680 cctattacgctttttatatcttactctatccatttgtgtaggaattgaatatcaagacaccaagcaaagaagaaaaacaa 49358759  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 52182242 - 52182321
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaa 80  Q
    ||||||||||||||||||| |||||||||||||||| | | |||||||||  |||||||| ||| ||| |||||||||||    
T  52182242 cctattacgctttttatatcttactctatccatttgcgcatgaattgaatggcaagacaccaagcaaggaagaaaaacaa 52182321  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 37367538 - 37367614
Alignment:
Q  182 tcgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagtta 258  Q
    |||||||||||  || |||||||||  ||||||||| |||| |||||||||||   ||| |||||||||||||||||    
T  37367538 tcgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtta 37367614  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 30239219 - 30239138
Alignment:
Q  183 cgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcag 264  Q
    ||||||||||  || |||||||||  ||||||||| |||| |||||||||||   ||| |||||||||||||| || |||||    
T  30239219 cgccaccaactcgcaatggcgagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagctagggcag 30239138  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 27591305 - 27591229
Alignment:
Q  182 tcgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagtta 258  Q
    |||||||||||  || |||||||||  ||||||||  |||| |||||||||||   ||| |||||||||||||||||    
T  27591305 tcgccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagtta 27591229  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 54300672 - 54300751
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaag 81  Q
    ||||||||||||| ||||| ||||| || || ||||||||||||||| |  ||||||||||||  ||  ||||||||||||    
T  54300672 cctattacgctttatatatcttactatacccttttgtgtaggaattg-acctcaagacactaaacaaagaagaaaaacaag 54300751  T

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Target: scaffold1487 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 1148 - 1443
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaa-gaaagaaaaacaaggatttgtgaaaaaagtca 99  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||  |||||||||||| ||| ||||||||||||| ||||||||||||| ||||    
T  1148 cctattacgctttttatatcttactctatccatttgtgcaggaattgaacgtcaagacactaaaaaaagaaagaaaaacaaagatttgtgaaaaa-gtca 1246  T
Q  100 acttgccatggcaagtgatctacctgccatggcaagtgatttactcgcg----aggcgagtagaggcagagagtaccagaagcaactcgccaccaacctg 195  Q
    |||||||||||| |||||  |||  || | ||| ||  ||  |  || |    ||| ||||||||||||||||||| ||  |||||||||||||||||||    
T  1247 acttgccatggcgagtgaattactcgcga-ggcgagc-atgaagacgagttcaaggtgagtagaggcagagagtactagtggcaactcgccaccaacctg 1344  T
Q  196 ccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggcagaaa 294  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||  |||| |||||||||||||||    
T  1345 ccatggcgagttcatggcgagctaactagccatggcgagcaaaattactcgcgaggcgagttaaggcggcctaatccctcaaatctgacgtggcagaaa 1443  T

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Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 155
Target Start/End: Complemental strand, 27902135 - 27901982
Alignment:
Q  2 ctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtgaaaaaagtcaac 101  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27902135 ctattacgctttttatatcttactctatccatttgtgcaggaattgaatgtcaagacactaagaaagaaagaaaaacaaggatttatgaaaaaagtcaac 27902036  T
Q  102 ttgccatggcaagtgatctacctgccatggcaagtgatttactcgcgaggcgag 155  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  27902035 ttgccatggcaagtgatctacttgccatggcaagtgaattactcgcgaggcgag 27901982  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 27901527 - 27901401
Alignment:
Q  168 gtaccagaagcaactcgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggcagctt 267  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||||| || |    
T  27901527 gtaccagaatcaactcgccaccaacctaccatggcgagttcaaagcgggcaaacttaccatggcgagcaaaattacgcgcgaggcgagttaaggcggcct 27901428  T
Q  268 aatcctgcaaagctgacgtggcagaaa 294  Q
    |||||| ||||||||||||||||||||    
T  27901427 aatccttcaaagctgacgtggcagaaa 27901401  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 24705897 - 24705818
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaa 80  Q
    ||||||| ||||||||||  || ||||| ||| ||||| ||||||||||| ||||||||||||| |||||||||||||||    
T  24705897 cctattatgctttttatacctttctctacccaattgtgcaggaattgaatgtcaagacactaagcaagaaagaaaaacaa 24705818  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 262
Target Start/End: Original strand, 9576263 - 9576330
Alignment:
Q  195 gccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggc 262  Q
    ||||||||||||  |||||||||| ||| |||||||||||   ||| ||||||||||||||| |||||    
T  9576263 gccatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggc 9576330  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 294
Target Start/End: Complemental strand, 18867734 - 18867663
Alignment:
Q  224 gccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaa--tcctgcaaagctgacgtggcagaaa 294  Q
    |||||||||| ||||| ||||||||||||||| |||||| || |||  |||| ||||| ||||||||||||||    
T  18867734 gccatggcgaacaaaactactcgcgaggcgagctaaggcggcctaacctcct-caaagttgacgtggcagaaa 18867663  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 24180067 - 24179991
Alignment:
Q  182 tcgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagtta 258  Q
    |||||||||||  || ||||| |||  ||||||||| |||| |||||||||||   ||| |||||||||||||||||    
T  24180067 tcgccaccaactcgcaatggctagtggaaggcgagcaaactcgccatggcgagtggaatgactcgcgaggcgagtta 24179991  T

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Target: scaffold0265 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 14167 - 14256
Alignment:
Q  1 cctattacgcttttt-atattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaaggatttgtg 89  Q
    ||||||||||||||| |||| |||||||| ||||||||| ||||||||||| |||||||||||||||||||  ||||||||| |||||||    
T  14167 cctattacgcttttttatatcttactctacccatttgtgcaggaattgaatgtcaagacactaagaaagaattaaaaacaagaatttgtg 14256  T

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Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 2008 - 2074
Alignment:
Q  224 gccatggcgagcaaaattactcgcgaggcgagttaaggcagcttaatcctgcaaagctgacgtggca 290  Q
    |||||||||||||| ||||||||||||||||  |||||| || ||  ||| ||||||||||||||||    
T  2008 gccatggcgagcaacattactcgcgaggcgaactaaggcggcctagcccttcaaagctgacgtggca 2074  T

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Target: scaffold0510 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 2003 - 1938
Alignment:
Q  197 catggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggc 262  Q
    ||||||||||  |||||||||| ||| ||||||||||   || |||||||||||||||||||||||    
T  2003 catggcgagtggaaggcgagcttactcgccatggcgaatgaatttactcgcgaggcgagttaaggc 1938  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 36020965 - 36021044
Alignment:
Q  183 cgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggc 262  Q
    ||||||||||  || |||||||||  |||||||||| ||| |||||||||||   ||| ||||||||||||||| |||||    
T  36020965 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggc 36021044  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 36424957 - 36425033
Alignment:
Q  182 tcgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagtta 258  Q
    |||||||||||  || |||||||||  ||||||||  |||| |||||||||||   ||| |||||||||||||||||    
T  36424957 tcgccaccaactcgcaatggcgagtggaaggcgagaaaactcgccatggcgagtggaatgactcgcgaggcgagtta 36425033  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 11908948 - 11909026
Alignment:
Q  1 cctattacgctttttatattttactctatccatttgtgtaggaattgaatatcaagacactaagaaagaaagaaaaacaa 80  Q
    |||||||| |||| | ||| |||||||| ||||||||| ||||||||||  ||||||||| ||||||  |||||||||||    
T  11908948 cctattacactttatttatcttactctacccatttgtgcaggaattgaac-tcaagacaccaagaaaagaagaaaaacaa 11909026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 43268853 - 43268774
Alignment:
Q  183 cgccaccaacctgccatggcgagttcaaggcgagctaacttgccatggcgagcaaaattactcgcgaggcgagttaaggc 262  Q
    ||||||||||  || |||||||||  |||||||||| ||| |||||||||||   ||| ||||||||||||||| |||||    
T  43268853 cgccaccaactcgcaatggcgagtggaaggcgagcttactcgccatggcgagtggaatgactcgcgaggcgagtgaaggc 43268774  T

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