View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_high_1 (Length: 874)
Name: NF13059_high_1
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 99 - 434
Target Start/End: Complemental strand, 19876412 - 19876077
Alignment:
| Q |
99 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcacgtgcgcacacattcacaaaaaatgtggcattaaattcataattcacaaaaaa |
198 |
Q |
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| T |
19876412 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcacgtgcgtacacattcacaaaaaacatggcattaaattgataattcacaaaaaa |
19876313 |
T |
|
| Q |
199 |
cattatcactttatcaacagacaaataaataaggaatcttttgacaatacaacactttgattaatctttgtccatgcttatattgaaaaagaataaagaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19876312 |
cattatcactttatcaacagacaaataaataaggaatcctttggcaatacaacactttgattaatctttgtccatgcttctattgaaaaagaataaagaa |
19876213 |
T |
|
| Q |
299 |
ggatgcattttatttcttagaaatcaattaatccttcaaaataaaatgattaacccacaagatttccctgagccaataatccaagttcaatttctatcca |
398 |
Q |
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|||| ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19876212 |
ggatacattttattccttagaattcaattaatccttcaaaataaaatgatcaacccacaagatttccttgagccaataatccaagttcaatttctatcca |
19876113 |
T |
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| Q |
399 |
agcttctagttcaatctctactatttctactcacaa |
434 |
Q |
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||||||| |||||||||||| ||||||||||||||| |
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| T |
19876112 |
agcttcttgttcaatctctattatttctactcacaa |
19876077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 19879428 - 19879323
Alignment:
| Q |
99 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcacgtgcgcacacattcacaaaaaatgtggcattaaattcataattcacaaaaaa |
198 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19879428 |
ttgtatctttatgaattaagtaatcaaagcacctttgctcgcacgcacgtgcgcacacattcacaaaaaacgtggcattaaattcataattcacaaaaaa |
19879329 |
T |
|
| Q |
199 |
cattat |
204 |
Q |
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|||||| |
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| T |
19879328 |
cattat |
19879323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 221 - 309
Target Start/End: Original strand, 19853477 - 19853566
Alignment:
| Q |
221 |
aaataaataaggaatcttttgacaatacaac-actttgattaatctttgtccatgcttatattgaaaaagaataaagaaggatgcatttt |
309 |
Q |
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|||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| || ||||||| |||||||||||||||||||| |
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| T |
19853477 |
aaataaataaggaatcctttgacaatacaactactttaattaatctttgttcatgcttctactgaaaaataataaagaaggatgcatttt |
19853566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 146
Target Start/End: Complemental strand, 19875954 - 19875907
Alignment:
| Q |
99 |
ttgtatctttatgaattaaataatcaaagcacccttgctcgcacgcac |
146 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
19875954 |
ttgtatctttatgaattaaataatcaacgcacacttgctcgcacgcac |
19875907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 698 - 748
Target Start/End: Complemental strand, 19887214 - 19887164
Alignment:
| Q |
698 |
tgaaatgcaaggaaaaaagtcattaaaagtagtagagtctaatgttaaagc |
748 |
Q |
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||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
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| T |
19887214 |
tgaaatgcagggaaaaaagtcttaaaaagtagtagagtctaatgttaaagc |
19887164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 698 - 748
Target Start/End: Original strand, 19358485 - 19358535
Alignment:
| Q |
698 |
tgaaatgcaaggaaaaaagtcattaaaagtagtagagtctaatgttaaagc |
748 |
Q |
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|||||||| ||||||||||| || |||||||||||||| ||||||||||| |
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|
| T |
19358485 |
tgaaatgccaggaaaaaagttataaaaagtagtagagtgaaatgttaaagc |
19358535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 698 - 748
Target Start/End: Complemental strand, 32578358 - 32578307
Alignment:
| Q |
698 |
tgaaatgcaaggaaaaaagtcat-taaaagtagtagagtctaatgttaaagc |
748 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
32578358 |
tgaaatgcaaggaaaaaagtcataaaaaagtagtagagtgaaatgttaaagc |
32578307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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