View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_high_14 (Length: 431)
Name: NF13059_high_14
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 32686925 - 32687185
Alignment:
| Q |
18 |
catagggccatgcgagctgttttattttatttcttttgggttttgattgagaccatctaaaggactacttatgcacatggtttgaaattgacaactaaat |
117 |
Q |
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| T |
32686925 |
catagggccatgcgagctgttttattttatttcttttgggttttgattgagaccatctaaaggactacttatgcacatggtttgaaattgacaactaaat |
32687024 |
T |
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| Q |
118 |
gatgttgtacggttggaaataattcaatgttttaaaagtcggattgagccggccggttcaaccaatttgtcgacttggtttaactcggattatcatgtat |
217 |
Q |
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| T |
32687025 |
gatgttgtacggttggaaataattcaatgtttgaaaaatcggattgagccggccggttcaatcaatttgtcgacttggtttgactcggattatcatgtat |
32687124 |
T |
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| Q |
218 |
tcttgctcaacatagttaaatgggagttagattgagttgaattgtgattgaatcgtgattggttcatcaac |
288 |
Q |
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| T |
32687125 |
tcttgctcaacatagttaaatgg----------gagttgaattgtgattgaatcgtgattggttcatcaac |
32687185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 32687258 - 32687312
Alignment:
| Q |
362 |
cggattaaacaatgattcaaagatctcatcgattctatc--tggtctaatttttt |
414 |
Q |
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| T |
32687258 |
cggattaaacaatgattcaaagatctcatcgattctatctttggtctaatttttt |
32687312 |
T |
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