View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_high_18 (Length: 386)
Name: NF13059_high_18
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 19785835 - 19786181
Alignment:
| Q |
19 |
ctaatcaatggggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
118 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19785835 |
ctaatcaatggggtttgattccttacaatagagttgcttctgtggcgatgaagttttataaggaaaagtttttgaagcatgataaggagaggtttgagaa |
19785934 |
T |
|
| Q |
119 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaa |
218 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
19785935 |
gtacttgaaggatgtgaaggcaggaaagactactattgctgctggtgctttgcttcctcaccagattatagagtctttgggggatggagatggtggagaa |
19786034 |
T |
|
| Q |
219 |
gttgctgagttgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
19786035 |
gttgctgagttgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtgtgatgtttctgggagcatgtctg |
19786134 |
T |
|
| Q |
319 |
ggactcctatggaggtgtgtgtggcattggggttgttggtgtctgaa |
365 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
19786135 |
ggactcctatggaggtgtctttggcattggggttgttggtgtctgaa |
19786181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 19795752 - 19795397
Alignment:
| Q |
19 |
ctaatcaatggggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19795752 |
ctaatcaatggggtttgattccatacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
19795653 |
T |
|
| Q |
119 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
19795652 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttggatgatgaagatggtggagaa |
19795553 |
T |
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| Q |
219 |
gttgctgagttgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctg |
318 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||| || |
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| T |
19795552 |
gtggctgagttgcagtggaagagaattgttgatgatttgctcaagaagggaaaaatgaggaattgtcttgctgtgtgtgatgtgtctgggagtatgcatg |
19795453 |
T |
|
| Q |
319 |
ggactcctatggaggtgtgtgtggcattggggttgttggtgtctgaagtgaacgag |
374 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19795452 |
ggacccctatggaggtgtgtgtggcattggggttgttggtgtctgaattgaacgag |
19795397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 15835059 - 15834704
Alignment:
| Q |
19 |
ctaatcaatggggtttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaa |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15835059 |
ctaatcaatggggtttgattccttataatagggttgcttctgtggccatggagttttataaggagaagtttttgaagcatgatgaggagaggtttgagaa |
15834960 |
T |
|
| Q |
119 |
gtacttggaggatgtgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaa |
218 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| | ||||| ||||||||||| |
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| T |
15834959 |
gtacttgcaggatgtgaaggcagggaagactactatggctgctggtgctttgcttcctcataagattataaagtcttttttgaatggatatggtggagaa |
15834860 |
T |
|
| Q |
219 |
gttgctgagttgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctg |
318 |
Q |
| |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||| || |
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| T |
15834859 |
gtggatgagttgcagtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgcagtgtctgatgtgtctgcgagtatgtatg |
15834760 |
T |
|
| Q |
319 |
ggactcctatggaggtgtgtgtggcattggggttgttggtgtctgaagtgaacgag |
374 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
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|
| T |
15834759 |
ggacccctatggaggtgtctgtggcattggggttgttggtgtctgaattgagcgag |
15834704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 33 - 365
Target Start/End: Complemental strand, 47712637 - 47712305
Alignment:
| Q |
33 |
ttgattccttacaatagggttgcttctgtggcgatgaagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggaggatg |
132 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
47712637 |
ttgattccttacaacagggttgcgtctgtggcgatggagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatg |
47712538 |
T |
|
| Q |
133 |
tgaaggcagggaagactactattgctgctggtgctttgcttcctcacgagattatagagtctttgggggatggagatggtggagaagttgctgagttgca |
232 |
Q |
| |
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|||| | ||||||||||| || ||||||||||||||||||||||| || ||||| ||| ||||||||||||||||||||||| || || ||||| || |
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| T |
47712537 |
tgaaagtggggaagactacgatcgctgctggtgctttgcttcctcatgatattattcggtcgttgggggatggagatggtggagaggtggcggagttaca |
47712438 |
T |
|
| Q |
233 |
gtggaagagaattgttgatgatttgctcaagaaaggaaagatgaaaaattgtcttgctgtgtgtgatgtgtctgggagcatgtctgggactcctatggag |
332 |
Q |
| |
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||||| |||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |
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| T |
47712437 |
gtggacgagaatggtggatgatttgctcaagaaagggaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggat |
47712338 |
T |
|
| Q |
333 |
gtgtgtgtggcattggggttgttggtgtctgaa |
365 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |
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|
| T |
47712337 |
gtgtgtgtggcattgggattgttggtgtctgaa |
47712305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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