View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13059_high_22 (Length: 337)
Name: NF13059_high_22
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 34356697 - 34357014
Alignment:
| Q |
1 |
cgttaaaggaaattgtagagaattggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacgtttaacacat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356697 |
cgttaaaggaaattgtagag--ttggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacgtttaacacat |
34356794 |
T |
|
| Q |
101 |
gatgggtggtaaggattggggcatcccctgnnnnnnnnnnnnnnnnnnnncaatgaattttcataatagtaaataccaattgtagtccatacaaacagtt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356795 |
gatgggtggtaaggattgggacatcccctgaaaaacacaaaaagaaaaaacaatgaattttcaaaatagtaaataccaattgtagtccatacaaacagtt |
34356894 |
T |
|
| Q |
201 |
tgtatctcgaatatattctgtaacaaattttaaacataaaattgatgactaattaatatatgctaatcctaattttataaatttaaggtacgatttatag |
300 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34356895 |
tgtatctcgaatatattctgtgacaaattttaaacataaaattgatgactaattaatatatgccaatcctaattttataaatttaaggtacgatttatag |
34356994 |
T |
|
| Q |
301 |
actttctgggtaggtaaatt |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
34356995 |
actttctgggtaggtaaatt |
34357014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 35046982 - 35046862
Alignment:
| Q |
10 |
aaattgtagagaattggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcacg-tttaacacatgatgggtg |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
35046982 |
aaattgtagagagttggaataagaaaacttaccggtaccagaattcaagttttccttggcttgaaccaagactttctcccgttttaacacatgatgggtg |
35046883 |
T |
|
| Q |
109 |
gtaaggattggggcatcccct |
129 |
Q |
| |
|
||||||||| | ||||||||| |
|
|
| T |
35046882 |
gtaaggattagtgcatcccct |
35046862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 49761569 - 49761620
Alignment:
| Q |
53 |
ttcaagttttccttggcttgaaccaagactttctcacgtttaacacatgatg |
104 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49761569 |
ttcaagtttaccttggcttgaaaggagactttctcacgtttaacacatgatg |
49761620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University