View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_10 (Length: 482)
Name: NF13059_low_10
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Original strand, 43036892 - 43037349
Alignment:
| Q |
11 |
cagagatgcgcaatgacaacgatttatgcagcttttgagttcaataatatgttcaattgttcagttttcaatgtatccctcctttaagctcaatgttcaa |
110 |
Q |
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| T |
43036892 |
cagagatgcgcaatgacaacgatttatgcagcttttaagttcaataagatgttcaattgttcagttttcaatgtatccctcctttaagctcaatgttcaa |
43036991 |
T |
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| Q |
111 |
acatttactctaaaattcttataaaattttgcattcgactcatatggaagtccgtaccattttctctatttctattgtgccaattcaaggcgcttaacat |
210 |
Q |
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| T |
43036992 |
acatttactctgaaattcttataaaattttgcattcgactcatatggaagtccgtaccattttctctatttctattgtgccaattcaaggcgcttaacat |
43037091 |
T |
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| Q |
211 |
ctatttagacctaaagcaaacttgaaagacaccctttctaaccataacttttatgttctaaaggatgcctcgctgatctatttttagcagactgcttcaa |
310 |
Q |
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| T |
43037092 |
ctatttagacctaaagcaaacttgaaagacaccctttctaaccataacttttatgttctaaaggatgcctcgctgatctatttttagcagactgcttcaa |
43037191 |
T |
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| Q |
311 |
attaaactctgtcactgatagtaaatattacaatccactgcttcaaattaaactccgtcactcttatataaaacaaaaaattacatttgaaaataaacac |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037192 |
attaaactctgtcactgatagtaaatattacaatccactgtttcaaattaaactccgtcactcttatataaaacaaaaaattacatttgaaaataaacac |
43037291 |
T |
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| Q |
411 |
attattacagtctacacataacaagatttatgagcaaataagcaggacagagtataat |
468 |
Q |
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| T |
43037292 |
actattagagtctacacataacaagatttatgagcaaataagcaggacagagtataat |
43037349 |
T |
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