View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13059_low_11 (Length: 478)
Name: NF13059_low_11
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 49672380 - 49671924
Alignment:
| Q |
1 |
tgagaagtcctaacattacaagagacgaagnnnnnnntttggtgttaaccttccggtttcaaggaaaaaggtctttataatcatttgagctcaattgctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49672380 |
tgagaagtcctaacattacaagagacgaagaaaaaaatttggtgttaaccttccggtttcaaggaaaaaggtctttataatcatttgagctcaattgctt |
49672281 |
T |
|
| Q |
101 |
ggttcgaaggaagcaaataaaatctcatataaaagaaaagagaatcaaatcattatatacacactactgtctaaaaggacaaaaactgcccttaatatag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49672280 |
ggttcgaaggaagcaaataaaatctcatataaaagaagagagaatcaaatcattatatacacactactgtctaaaaggacaaaaactgcccttaatatag |
49672181 |
T |
|
| Q |
201 |
ttgtaacaaaaccctttttgtataacatattatctaagattattnnnnnnnntatatatactacaaaagttgggggagggaagatacattatatttaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49672180 |
ttgtaacaaaaccctttttgtataacatattatctaagattattaaaaaaaatatatat--tacaaaagttgggggagggaagatacattatatttaaac |
49672083 |
T |
|
| Q |
301 |
tcgtttacaatgacaatagagctaaaatctaatcacttgtataccaaaagtaaaaagtgtgccctcttattatgaatgacaatgtttaaatgctgcatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49672082 |
tcgtttacaatgacaatagagctaaaatctaatcacttgtataccaaaagtaaaaagtgtgccctcttattatgaatgacaatgtttaaatgctgcatat |
49671983 |
T |
|
| Q |
401 |
cagtaattagtttgcaaggctatgctatcaacgaccactggtattagaaggtactggat |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49671982 |
cagtaattagtttgcaaggctatgctatcaacgaccactggtattagaaggtactggat |
49671924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University