View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13059_low_13 (Length: 435)
Name: NF13059_low_13
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 375
Target Start/End: Original strand, 3014934 - 3015306
Alignment:
| Q |
13 |
cataggtcctatacataagaaggatgtggagaaggcca----------gtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3014934 |
cataggtcctatacataagaaggatgtggagaaggccagtgcaagccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgc |
3015033 |
T |
|
| Q |
103 |
cagagtcactcctgaagcttggcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaagaggtac |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3015034 |
cagagtcacccctgaagcttggcaacttgcacataaattgggtgtcaaaatatttatctccgataaaatgcatcatctatttgatcaatttaataggtac |
3015133 |
T |
|
| Q |
203 |
aggaacaacattactcacatgaacaacaataaggatgagaacaagaaagattctgctgatgaggcctgcattctcaagatcatgcccaattctgtcttca |
302 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3015134 |
aaggacaacattactcacatgaacaacaataaggatgagaacaagaaagattctgctgatgaggcctgcgttctcaagatcatgcccaattctgtcttca |
3015233 |
T |
|
| Q |
303 |
acaataaggattccattgttttgggagtagatatccttcaaggcattttaaaggtatcgtttataattcagat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3015234 |
acaataaggattccattgttttgggagtaaatatccttcaaggcattttaaaggtatcatttataattcagat |
3015306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 40671853 - 40671533
Alignment:
| Q |
13 |
cataggtcctatacataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcact |
112 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||| |
|
|
| T |
40671853 |
cataggtcctgttcataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgttgtgttggcgtttcctgccatggtcacc |
40671754 |
T |
|
| Q |
113 |
cctgaagcttggcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaagaggtacaggaacaaca |
212 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
40671753 |
cctggagcttggcaacttgcacacaaattgggtgtcaaaattttcatctccgataaaatgcatcatctatttgatcgatttaagacttacatgaacaaca |
40671654 |
T |
|
| Q |
213 |
ttactcacatgaacaacaataaggatgagaacaagaaagattctgctgatgaggcctgcattctcaagatcatgcccaattctgtcttcaacaataagga |
312 |
Q |
| |
|
| |||||| | | | ||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||| ||||||| |
|
|
| T |
40671653 |
t------------------taaggaggcgcaaaagaaagattctgctgatgaggcctgcgttctcaagatcaagccaaattttgtcttcaaccataagga |
40671572 |
T |
|
| Q |
313 |
ttccattgttttgggagtagatatccttcaaggcatttt |
351 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40671571 |
tcccattgttttgggagtagatgtccttcaaggcatttt |
40671533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 44607525 - 44607863
Alignment:
| Q |
13 |
cataggtcctatacataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcact |
112 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| || |||||||||||||| || || |||||| |
|
|
| T |
44607525 |
cataggccctgtacataagaaggatgtgatgaaggccagtgtaatgcttgaaaagaaacgagaatattctactatattggcgtttgatgtcaaagtcacc |
44607624 |
T |
|
| Q |
113 |
cctgaagcttggcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaagaggtacaggaacaaca |
212 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||| |||| |
|
|
| T |
44607625 |
tctgaagctaaggaacttgcagataaattgggtgtgaaaatttttattgccgatattatttatcatctatttgatcaattta--aggt------------ |
44607710 |
T |
|
| Q |
213 |
ttactcacatgaacaacaataaggatgagaacaagaaagattctgctgatgagg---------cctgcattctcaagatcatgcccaattctgtcttcaa |
303 |
Q |
| |
|
| ||||| ||||| |||||| ||||| |||||||| ||||||||||||| | ||| |||| |||||||| || |||| ||||||||| |
|
|
| T |
44607711 |
----ttacatggccaacattaaggaggagaaaaagaaagaatctgctgatgaggcagtctttccatgcgttctgaagatcataccaaattgtgtcttcaa |
44607806 |
T |
|
| Q |
304 |
caataaggattccattgttttgggagtagatatccttcaaggcattttaaaggtatc |
360 |
Q |
| |
|
||| |||||| | ||| |||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
44607807 |
caagaaggatccgattattttgggagttgatatccttaaaggcattttaaaggtatc |
44607863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 44629042 - 44629214
Alignment:
| Q |
24 |
tacataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcactcctgaagcttg |
123 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||| |||||||||| ||| || || |||||| ||||||||| | |
|
|
| T |
44629042 |
tacataagaaggatgtgatgaaggccagtgtgatgcttgaaaagaaacgagaatatgctactatattggcatttgatgtcaaagtcacccctgaagctag |
44629141 |
T |
|
| Q |
124 |
gcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaag |
196 |
Q |
| |
|
| | |||||| | |||||||||| || |||||||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
44629142 |
ggatcttgcagaggaattgggtgtgaagatttttatagccgatatcatttatcatctatttgatcaatttaag |
44629214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 44629282 - 44629367
Alignment:
| Q |
273 |
ttctcaagatcatgcccaattctgtcttcaacaataaggattccattgttttgggagtagatatccttcaaggcattttaaaggta |
358 |
Q |
| |
|
|||| |||||| | || |||| |||||||||||| |||||| | |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
44629282 |
ttctgaagatcttaccaaattgtgtcttcaacaagaaggatccaattgttttgggagttgatatccttgaaggcattttaaaggta |
44629367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University