View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_16 (Length: 412)
Name: NF13059_low_16
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 30708811 - 30709208
Alignment:
| Q |
1 |
tggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggca |
100 |
Q |
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| T |
30708811 |
tggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggca |
30708910 |
T |
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| Q |
101 |
tagatggtgtgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgtgtcagcggctcac |
200 |
Q |
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| T |
30708911 |
tagatggtatgcagaatccaagttagtaatcatcacttttgagtaatcttcggttctttactcacttgttggcttcctcacatttgtgtcagcggctcac |
30709010 |
T |
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| Q |
201 |
aaaattataatatgcacagtcgaacacagttcagtataagctgaagtcatgcataaccgaaacaagtctagcgcattaacaaaaagaacaataaaaagaa |
300 |
Q |
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| T |
30709011 |
aaaattataatatgcacagtcgaacacagttcagtataagctgaagtcatgcataaccgaaacaagtctagcgcattaacaaaaagaacaataaaaagaa |
30709110 |
T |
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| Q |
301 |
acaatttctaattttatgattgttaaatacaaatagctaattagtaatatatatagatcctgatttcagttgttaagtacattttgatgatattaatg |
398 |
Q |
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| T |
30709111 |
acaatttctaattttatgattgttaaatacaaatagctaattagtaatatatatagatcctgatttcagttgttaagtacattttgatgatattaatg |
30709208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 30699341 - 30699522
Alignment:
| Q |
3 |
gttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcata |
102 |
Q |
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| T |
30699341 |
gttccagaacctacgtgtgtcagagatgcaacagaggaattgaatacaatgcttc---catttccagattctttaagaagaggatatgtcagttggcata |
30699437 |
T |
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| Q |
103 |
gatggtgtgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
187 |
Q |
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| T |
30699438 |
gatggtatgcagaatccaagttaatagtcatcaattttgaataatcttctgttgtatactcaattgttggtttcctcacatttgt |
30699522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 30706177 - 30706357
Alignment:
| Q |
4 |
ttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatag |
103 |
Q |
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| T |
30706177 |
ttccagtacctacacttattagagatgcaacagaggaaatgaacacaatgcttc---catttccagattctttaagaagaggatatgctagttgacatag |
30706273 |
T |
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| Q |
104 |
atggtgtgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
187 |
Q |
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| T |
30706274 |
atggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctgtatactcaattgttggcttcctcacatttgt |
30706357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 4 - 187
Target Start/End: Original strand, 30719160 - 30719340
Alignment:
| Q |
4 |
ttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatag |
103 |
Q |
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| T |
30719160 |
ttccagtacctacgcttgtcagagacccaacagaggaaatgaaaacaatgcttc---catttccagattctttaagaagaggatatgtcagttggcatag |
30719256 |
T |
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| Q |
104 |
atggtgtgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
187 |
Q |
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| T |
30719257 |
atgatatgcagaatccaagttagtagtcatcactttcgaataatcttcggccgtatactcgattgttggcttcctcacatttgt |
30719340 |
T |
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