View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_17 (Length: 394)
Name: NF13059_low_17
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 12503436 - 12503171
Alignment:
| Q |
16 |
atagaggcacttaagtatatttccttatatatggttggtttattaccgttggcttatcaaaaggaaataatagccataaagccacttaatgtatatttcc |
115 |
Q |
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| T |
12503436 |
atagaggcacttaagtatatttccttatatatggtt----tattaccgttggcttatcaaaaggaaataatagccataaagccacttaatgtatatttcc |
12503341 |
T |
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| Q |
116 |
ttatatcatgtgcattactgttggctattagtcatatatatgtaacatgtaccgtagagagattagtggacataatatacaaaccagattacattctagc |
215 |
Q |
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| T |
12503340 |
ttatatcatgtgcattaccgttggctattagtcatatatatgtaacatgtactgtagagagattagtggacataatatacaaaccagattacattctagc |
12503241 |
T |
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| Q |
216 |
tacagtccattgtccatatcatatttttactttcattaggatgtagttgcgagtgttggcgacgaggtat |
285 |
Q |
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| T |
12503240 |
tacagtccattgtccatatcatatttttactttcattaggatgtagttgcgagtgttgacgacgaggtat |
12503171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 53 - 254
Target Start/End: Complemental strand, 44524062 - 44523855
Alignment:
| Q |
53 |
gtttattaccgttggcttatcaaaaggaaataatagccataaagccacttaatgtatatttccttatatcatgtgcattactgttggctattagtcatat |
152 |
Q |
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| T |
44524062 |
gtttattactgttggcttatcaaaagcaaataatagccatgaagacacttaatgtatatctctttatatcatgtttattaccgttggttattcgacatat |
44523963 |
T |
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| Q |
153 |
atat------gtaacatgtaccgtagagagattagtggacataatatacaaaccagattacattctagctacagtccattgtccatatcatatttttact |
246 |
Q |
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| T |
44523962 |
atatgtaagtgtaacatgtactttagagacatcagtggacataatatacaaacctgattacattccagccactgtccattgttcatatcttatttttatt |
44523863 |
T |
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| Q |
247 |
ttcattag |
254 |
Q |
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|||||||| |
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| T |
44523862 |
ttcattag |
44523855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 254
Target Start/End: Original strand, 37726155 - 37726239
Alignment:
| Q |
170 |
tagagagattagtggacataatatacaaaccagattacattctagctacagtccattgtccatatcatatttttactttcattag |
254 |
Q |
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| T |
37726155 |
tagagatatcagtggacataatatacaaaccagattacattctagccactgtccattgttcatatcatatttttattttcattag |
37726239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 41322105 - 41322264
Alignment:
| Q |
100 |
cttaatgtatatttccttatatcatgtgcattactgttggctattagtcatatatatgta------acatgtaccgtagagagattagtggacataatat |
193 |
Q |
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|||||||||||| || ||||||||||| ||||| ||||| |||| |||||||||||| |||||||| |||||| || |||| ||||||||| |
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| T |
41322105 |
cttaatgtatatctctttatatcatgtttattaccgttggttattcaacatatatatgtaagtgtaacatgtactttagagatatcagtgaacataatat |
41322204 |
T |
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| Q |
194 |
acaaaccagattacattctagctacagtccattgtccatatcatatttttactttcatta |
253 |
Q |
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||||||| |||||||||| ||| || ||||||||| |||||| |||||||| |||||||| |
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| T |
41322205 |
acaaacctgattacattccagccactgtccattgttcatatcttatttttattttcatta |
41322264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 41319065 - 41319115
Alignment:
| Q |
53 |
gtttattaccgttggcttatcaaaaggaaataatagccataaagccactta |
103 |
Q |
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| T |
41319065 |
gtttattaccgttgacttatcaaaagcaaataatagccatgaagacactta |
41319115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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