View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_2 (Length: 855)
Name: NF13059_low_2
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 21 - 412
Target Start/End: Original strand, 38278272 - 38278663
Alignment:
| Q |
21 |
taccctctcgccgccgtgagttcctctccacctcagccaccatcctcaccaccacatttctagctcatgtcacccctgcattagcagcttcagatgaaga |
120 |
Q |
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| T |
38278272 |
taccctctcgccgccgtgagttcctctccacctcagccaccatccttaccaccacatttctagctcatgtcacccctgcattagcagcttcagatgaaga |
38278371 |
T |
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| Q |
121 |
gtacgtgaaagaaacagaggaggttataagcaaggtaagaacaaccataacactggacaagaatgatccaaatgtagctactgctgttgctgaactaaga |
220 |
Q |
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| T |
38278372 |
gtacgtgaaagaaacagaggaggttataagcaaggtaagaacaaccataacactggacaagaatgatccaaatgtagctactgctgttgctgaactaaga |
38278471 |
T |
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| Q |
221 |
gacacttcaaactcatgggttgctaaatatagaagagaaaaagcacttcttgcaagagcttcttttagagatatgtactctgcactcaatgctgtttcag |
320 |
Q |
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| T |
38278472 |
gacacttcaaactcatgggttgctaaatatagaagagaaaaagcacttcttgcaagagcttcttttagagatatgtactctgcactcaatgctgtttcag |
38278571 |
T |
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| Q |
321 |
gtcattatattagttttggtccaactgctcctattcctgctaagagaagagtgaggattttagaggaaattgaagttgctgagaaatcactt |
412 |
Q |
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| T |
38278572 |
gtcattatattagttttggtccaactgctcctattcctgctaagagaagagtgaggattttagaggaaattgaagttgctgagaaatcactt |
38278663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 578 - 842
Target Start/End: Original strand, 38278829 - 38279091
Alignment:
| Q |
578 |
cgaaaaactaatatattacattaagaggctcaccttttctgttaataaaaggagaaaattatttgcatagtttaatgtatcgaataatggaggctatgct |
677 |
Q |
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| T |
38278829 |
cgaaaaacttatatattacattaagaggctcactttttctgttaataaaaggagaaaattatttgcatagtttaatgtatcgaataatggaggttttgtt |
38278928 |
T |
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| Q |
678 |
aactcactaagtgcttatttttagggttaagttgannnnnnnnnnnnatagatttaggaaagaactgaaactgcttattattcaaccataggatagaggc |
777 |
Q |
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| T |
38278929 |
aactcattaagtgcttatttttagggttaagttgattttgttttt--atagatttaagaaagaactgaaactgcttattattcaaccataggatagaggc |
38279026 |
T |
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| Q |
778 |
ccaagtttaatttggatgtttgagtttagaaatgataacattctctgaatggttagtggttactg |
842 |
Q |
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| T |
38279027 |
ccaagtttaatttggatgtttgagtttagaaatgataacattctctgaatggttagtggttactg |
38279091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 453 - 504
Target Start/End: Original strand, 38278704 - 38278755
Alignment:
| Q |
453 |
cacttaagttgctaatgtatttggaggaaatgaattttggttttcattcctc |
504 |
Q |
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| T |
38278704 |
cacttaagttgctaatgtatttggaggaaatgaattttggttttcattcctc |
38278755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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