View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13059_low_20 (Length: 385)

Name: NF13059_low_20
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13059_low_20
NF13059_low_20
[»] chr6 (5 HSPs)
chr6 (1-373)||(20206178-20206550)
chr6 (1-373)||(22100201-22100573)
chr6 (307-350)||(32342603-32342646)
chr6 (304-364)||(20067905-20067965)
chr6 (16-53)||(21972754-21972791)
[»] chr8 (2 HSPs)
chr8 (304-350)||(32166661-32166707)
chr8 (299-347)||(33897743-33897791)
[»] chr7 (3 HSPs)
chr7 (289-350)||(29152338-29152399)
chr7 (306-347)||(22593597-22593638)
chr7 (320-350)||(27651382-27651412)
[»] chr2 (6 HSPs)
chr2 (307-355)||(28282822-28282870)
chr2 (304-350)||(16576251-16576297)
chr2 (304-354)||(16863455-16863505)
chr2 (277-350)||(38576767-38576840)
chr2 (304-350)||(28282653-28282699)
chr2 (304-364)||(2248962-2249022)
[»] chr5 (7 HSPs)
chr5 (299-350)||(37077763-37077814)
chr5 (304-350)||(7215322-7215368)
chr5 (307-355)||(14138543-14138591)
chr5 (304-354)||(972828-972878)
chr5 (304-350)||(2243342-2243388)
chr5 (304-350)||(17736780-17736826)
chr5 (304-354)||(37077652-37077701)
[»] chr1 (8 HSPs)
chr1 (307-350)||(42819624-42819667)
chr1 (304-350)||(46080974-46081020)
chr1 (304-354)||(52432660-52432710)
chr1 (305-354)||(35660759-35660808)
chr1 (307-354)||(35956982-35957029)
chr1 (299-350)||(52432836-52432887)
chr1 (304-350)||(10775166-10775212)
chr1 (318-350)||(12144973-12145005)
[»] scaffold0264 (1 HSPs)
scaffold0264 (24-74)||(19311-19361)
[»] chr3 (4 HSPs)
chr3 (307-348)||(42091820-42091861)
chr3 (304-355)||(54437804-54437855)
chr3 (304-354)||(54437636-54437686)
chr3 (301-350)||(31758246-31758294)
[»] chr4 (3 HSPs)
chr4 (304-350)||(25062493-25062539)
chr4 (304-364)||(20512853-20512913)
chr4 (310-350)||(54000079-54000119)


Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 20206178 - 20206550
Alignment:
Q  1 ggatggagaaatgaagaattttagagtaagccatggaatttcttttttaatgagtctgtttgatttgaaatgataatacagatatgtnnnnnnngttaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  20206178 ggatggagaaatgaagaattttagagtaagccatggaatttcttttttaatgagtctgtttgatttgaaatgataatacagatatgtaaaaaaagttaga 20206277  T
Q  101 cactattttatacagcnnnnnnnnataaaggtcaacagtctcctttnnnnnnnnnnnnnnnnngctgaagactctaggtggtcttttaaagtaatcctta 200  Q
    ||||||||||||||||        ||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||    
T  20206278 cactattttatacagcttttttttataaaggtcaacagtctcctttaaaaaaaaaaaataaa-gctgaagactctaggtggtcttttaaagtaatcctta 20206376  T
Q  201 tcctttagtcatacattatcccct-gatgaatttgagtaacttaccttaatgacaagtaggacttgcctatgaaataaaggagatagagatcacatatta 299  Q
    | |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  20206377 tactttagtcatacattatccccttgatgaatttgggtaacttaccttaatgacaagtaggacttgactatgaaataaaggagatagagatcacatatta 20206476  T
Q  300 aattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaatatgatatt 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20206477 aattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaagatgatatt 20206550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 22100201 - 22100573
Alignment:
Q  1 ggatggagaaatgaagaattttagagtaagccatggaatttcttttttaatgagtctgtttgatttgaaatgataatacagatatgtnnnnnnngttaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  22100201 ggatggagaaatgaagaattttagagtaagccatggaatttcttttttaatgagtctgtttgatttgaaatgataatacagatatgtaaaaaaagttaga 22100300  T
Q  101 cactattttatacagcnnnnnnnnataaaggtcaacagtctcctttnnnnnnnnnnnnnnnnngctgaagactctaggtggtcttttaaagtaatcctta 200  Q
    ||||||||||||||||        ||||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||    
T  22100301 cactattttatacagcttttttttataaaggtcaacagtctcctttaaaaaaaaaaaataaa-gctgaagactctaggtggtcttttaaagtaatcctta 22100399  T
Q  201 tcctttagtcatacattatcccct-gatgaatttgagtaacttaccttaatgacaagtaggacttgcctatgaaataaaggagatagagatcacatatta 299  Q
    | |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22100400 tactttagtcatacattatccccttgatgaatttgggtaacttaccttaatgacaagtaggacttgactatgaaataaaggagatagagatcacatatta 22100499  T
Q  300 aattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaatatgatatt 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22100500 aattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaagatgatatt 22100573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 32342646 - 32342603
Alignment:
Q  307 aagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  32342646 aagtttgatgtttttgagatgaaaatgataattgattgtaagaa 32342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 364
Target Start/End: Complemental strand, 20067965 - 20067905
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaa 364  Q
    ||||||| | |||||||||||||||||||||||| ||||| |||||||||| | |||||||    
T  20067965 aagaagtataatgttattgagatgaaaatgataactgattctaagaataaaaatgaagaaa 20067905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 21972754 - 21972791
Alignment:
Q  16 gaattttagagtaagccatggaatttcttttttaatga 53  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  21972754 gaattgtagagtaagccatggaatttcttttttaatga 21972791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 32166661 - 32166707
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||    
T  32166661 aagaagtttgatgttcttgagatgaaaatgataattgatagtaagaa 32166707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 33897791 - 33897743
Alignment:
Q  299 aaattaagaagtttgatgttattgagatgaaaatgataattgattgtaa 347  Q
    |||||||||| ||||||||| |||||||||||||  |||||||| ||||    
T  33897791 aaattaagaattttgatgtttttgagatgaaaatagtaattgatagtaa 33897743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 29152338 - 29152399
Alignment:
Q  289 atcacatattaaattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||| || ||| |||||||||||||||||||||||||||||  ||| ||||||||||||    
T  29152338 atcacatgttgaatgaagaagtttgatgttattgagatgaaaatagtaactgattgtaagaa 29152399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 22593597 - 22593638
Alignment:
Q  306 gaagtttgatgttattgagatgaaaatgataattgattgtaa 347  Q
    ||||||||||||| ||||||||||||||| ||||||||||||    
T  22593597 gaagtttgatgttcttgagatgaaaatgacaattgattgtaa 22593638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 350
Target Start/End: Original strand, 27651382 - 27651412
Alignment:
Q  320 ttgagatgaaaatgataattgattgtaagaa 350  Q
    |||||||||||||||||||||||||||||||    
T  27651382 ttgagatgaaaatgataattgattgtaagaa 27651412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 28282870 - 28282822
Alignment:
Q  307 aagtttgatgttattgagatgaaaatgataattgattgtaagaataaat 355  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  28282870 aagtttgatattatggagatgaaaatgataattgattgtaagaaaaaat 28282822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 16576297 - 16576251
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  16576297 aagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaa 16576251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 16863505 - 16863455
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 354  Q
    ||||| ||||||||| |||||||||||||| ||| ||||||||||||||||    
T  16863505 aagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaa 16863455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 350
Target Start/End: Original strand, 38576767 - 38576840
Alignment:
Q  277 aaggagatagagatcacatattaaattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||| || |||| ||||| || ||| ||||||||||||  |||||||||||||||| ||| ||||||||||||    
T  38576767 aaggatatggagaacacatgttgaatgaagaagtttgattatattgagatgaaaatggtaactgattgtaagaa 38576840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 28282699 - 28282653
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||||||||||| |||||||||||| || | |||||||||||    
T  28282699 aagaagtttgatgttatggagatgaaaatggtattcgattgtaagaa 28282653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 2248962 - 2249022
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaa 364  Q
    ||||||||| ||||| |||||||||||||| ||| | ||| |||||||||| | |||||||    
T  2248962 aagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaa 2249022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 37077814 - 37077763
Alignment:
Q  299 aaattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    |||||||||| ||||||||| |||||||||||||| ||| ||||||||||||    
T  37077814 aaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaa 37077763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 7215322 - 7215368
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||    
T  7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaa 7215368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 355
Target Start/End: Complemental strand, 14138591 - 14138543
Alignment:
Q  307 aagtttgatgttattgagatgaaaatgataattgattgtaagaataaat 355  Q
    ||||||||| || || ||||||||||| |||||||||||||||||||||    
T  14138591 aagtttgatattcttaagatgaaaatggtaattgattgtaagaataaat 14138543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 972878 - 972828
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 354  Q
    ||||||||||||||| |||||||||||||||||| | ||| ||| ||||||    
T  972878 aagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaa 972828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 2243342 - 2243388
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||||||||| |||||||||||||| ||| | ||||||||||    
T  2243342 aagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 17736780 - 17736826
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||| || ||||||||||||||||| |||||| |||||||||    
T  17736780 aagaagtttaatattattgagatgaaaatggtaattggttgtaagaa 17736826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 37077701 - 37077652
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 354  Q
    ||||||||| ||||| |||||||||||||||||| ||||| ||||||||||    
T  37077701 aagaagtttaatgttcttgagatgaaaatgataactgatt-taagaataaa 37077652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 350
Target Start/End: Complemental strand, 42819667 - 42819624
Alignment:
Q  307 aagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    |||||| ||||| |||||||||||||||||||||||||||||||    
T  42819667 aagttttatgttcttgagatgaaaatgataattgattgtaagaa 42819624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 46081020 - 46080974
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  46081020 aagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaa 46080974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 52432710 - 52432660
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 354  Q
    ||||||||| ||||| |||||||||||||| ||||||||| ||||||||||    
T  52432710 aagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaa 52432660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 35660808 - 35660759
Alignment:
Q  305 agaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 354  Q
    |||||||||||||| |||| ||||||||| ||||||||| ||||||||||    
T  35660808 agaagtttgatgtttttgaaatgaaaatggtaattgattttaagaataaa 35660759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 354
Target Start/End: Complemental strand, 35957029 - 35956982
Alignment:
Q  307 aagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 354  Q
    |||||||||||| ||||||| |||||| ||||| ||||||||||||||    
T  35957029 aagtttgatgtttttgagataaaaatggtaattaattgtaagaataaa 35956982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 52432887 - 52432836
Alignment:
Q  299 aaattaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    |||| ||||||||||||||| |||||| ||||||||||| | ||||||||||    
T  52432887 aaatgaagaagtttgatgtttttgagaagaaaatgataactaattgtaagaa 52432836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 10775212 - 10775166
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||||||||| || ||||||||||| ||||||||| ||||||    
T  10775212 aagaagtttgatgttcttaagatgaaaatggtaattgattctaagaa 10775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 12145005 - 12144973
Alignment:
Q  318 tattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||| |||||||||||||||||||||||    
T  12145005 tattgagataaaaatgataattgattgtaagaa 12144973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 19311 - 19361
Alignment:
Q  24 gagtaagccatggaatttcttttttaatgagtctgtttgatttgaaatgat 74  Q
    ||||| |||||||||||||||| ||| ||||||||||||||||| ||||||    
T  19311 gagtacgccatggaatttctttcttattgagtctgtttgatttgcaatgat 19361  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 42091820 - 42091861
Alignment:
Q  307 aagtttgatgttattgagatgaaaatgataattgattgtaag 348  Q
    |||||||||||| |||||||||||||||||||| ||||||||    
T  42091820 aagtttgatgtttttgagatgaaaatgataattaattgtaag 42091861  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 54437855 - 54437804
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaat 355  Q
    ||||||||||||||| ||||||| |||||| ||| |||||||||||| ||||    
T  54437855 aagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaaat 54437804  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 54437686 - 54437636
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaa 354  Q
    ||||||||| |||||||||||||||||||| |||||  |||||| ||||||    
T  54437686 aagaagtttaatgttattgagatgaaaatggtaatttgttgtaataataaa 54437636  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 31758294 - 31758246
Alignment:
Q  301 attaagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||||||||| || || ||||||||||| ||||||||||||||||    
T  31758294 attaagaagtttgatatt-ttaagatgaaaatggtaattgattgtaagaa 31758246  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 25062539 - 25062493
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    |||||||||||| || |||||||||||| | ||||||||||||||||    
T  25062539 aagaagtttgatattcttgagatgaaaacggtaattgattgtaagaa 25062493  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 20512853 - 20512913
Alignment:
Q  304 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaataaataagaagaaa 364  Q
    |||||||||||||||  | |||||||||||| |||||||| ||| |||||| | |||||||    
T  20512853 aagaagtttgatgtttataagatgaaaatgacaattgattttaaaaataaagatgaagaaa 20512913  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 350
Target Start/End: Original strand, 54000079 - 54000119
Alignment:
Q  310 tttgatgttattgagatgaaaatgataattgattgtaagaa 350  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  54000079 tttgatgttcttgagatgaaaatggtaattgatagtaagaa 54000119  T

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