View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_21 (Length: 372)
Name: NF13059_low_21
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_21 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 162 - 310
Target Start/End: Complemental strand, 27668321 - 27668173
Alignment:
| Q |
162 |
ttgctttaaccatgttggtttacattttctttctcgtagacaacgtaaatggtcttggccttttgatcctcgcctttcaactccacacccaaatcattta |
261 |
Q |
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| T |
27668321 |
ttgctttaaccatgttggtttccattttctttctcgtagacaacgtaaatggtcttagccttttgatcctcgcctttcaactccacacccaaatcattta |
27668222 |
T |
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| Q |
262 |
tcttgactccgtcaacatcactaacctcaatactgaagtcgttgattta |
310 |
Q |
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| T |
27668221 |
tcttgactccgtcaacatcactaacctcaatactgaagccgttgattta |
27668173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 27668575 - 27668417
Alignment:
| Q |
1 |
agaaattgtactaacgacgaatctcaatttatcagatca---------tcttcaaacaaaatctcaaaaaactaacgttactccgataattcgagattcg |
91 |
Q |
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| T |
27668575 |
agaaattgtacgaatgacgaatctcaatttatcagatcaacgttagtttcttcaaactaaatctcaaaaaactaacgttactccgataatttgagattcg |
27668476 |
T |
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| Q |
92 |
tcattcaaacaagctctttgcacctttgttgaagtctttgcatggcatatcattcaagcat |
152 |
Q |
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| T |
27668475 |
tcattcaaacaagctcttt--acatttgttgaagcttttgcatggcatatcattcaagcat |
27668417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 27668773 - 27668918
Alignment:
| Q |
221 |
cttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgt |
320 |
Q |
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| T |
27668773 |
cttttgatacccacctttcaactccacactccaaccatttaccttgactcctccaacatcactaacctcaataccgaagcccttgatttaacggccatat |
27668872 |
T |
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| Q |
321 |
ttgatttatggttcatttttcatacttccaacaatgatgatgtcca |
366 |
Q |
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| T |
27668873 |
ttgatttatggttcatatttcatactcacaacaatgaagaggtcca |
27668918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 27673541 - 27673687
Alignment:
| Q |
214 |
tcttggccttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacg |
313 |
Q |
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| T |
27673541 |
tcttagccttttgatacccacctttcaactcaacaccccaagcatttatcttgactccgtcaacataactaacctcaataccgaagcccttaacttaata |
27673640 |
T |
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| Q |
314 |
gccatgtttgatttatggttcatttttcatacttccaacaatgatga |
360 |
Q |
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| T |
27673641 |
gccacgtttgattcatcgttcatttttcatactcccaacaatgatga |
27673687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 321 - 360
Target Start/End: Complemental strand, 27668180 - 27668141
Alignment:
| Q |
321 |
ttgatttatggttcatttttcatacttccaacaatgatga |
360 |
Q |
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| T |
27668180 |
ttgatttatggttcatttttcatacttccaacaatgatga |
27668141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 340
Target Start/End: Original strand, 8954 - 9033
Alignment:
| Q |
261 |
atcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgtttgatttatggttcattttt |
340 |
Q |
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| T |
8954 |
atcttgattccgttaacatcaccaaccttaataccaaagccgttaatttaacggccacgtttgatttatcgtttattttt |
9033 |
T |
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