View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_25 (Length: 331)
Name: NF13059_low_25
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 27668551 - 27668859
Alignment:
| Q |
1 |
gagattcgtcgttagtacaatttctctttacacccttgttgaggcctctgcatacataacattcaagcaccactagtacat----ggtttcttttatata |
96 |
Q |
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| T |
27668551 |
gagattcgtcattcgtacaatttctctttacacccttgttgaggcctctgcatacataacattcaagcaccactagtacatccatggcttcttttatata |
27668650 |
T |
|
| Q |
97 |
tccaaaattaatttctgttatggctaactttcatcgcattcattccaaattgaagtacaatttccttgatgccttaaccatgttggcttacattttcttc |
196 |
Q |
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| T |
27668651 |
tccaaaattaatttctgtcatggctaactttcatcgcattcattccaacttgaagttcaatttccttgatgccttaaccatgttggcttacatttttgtc |
27668750 |
T |
|
| Q |
197 |
ctcgtagccaattgttcttagtcttttgatacccacctttcaactccacactccaaccattttaccttgactcctccaacatgactaacctcaataccga |
296 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
27668751 |
ctcgtagtcaattgttcttagtcttttgatacccacctttcaactccacactccaacca-tttaccttgactcctccaacatcactaacctcaataccga |
27668849 |
T |
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| Q |
297 |
agcccttgat |
306 |
Q |
| |
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|||||||||| |
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| T |
27668850 |
agcccttgat |
27668859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 27673538 - 27673631
Alignment:
| Q |
209 |
tgttcttagtcttttgatacccacctttcaactccacactccaaccattttaccttgactcctccaacatgactaacctcaataccgaagccctt |
303 |
Q |
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| T |
27673538 |
tgttcttagccttttgatacccacctttcaactcaacaccccaagca-tttatcttgactccgtcaacataactaacctcaataccgaagccctt |
27673631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 306
Target Start/End: Complemental strand, 27668340 - 27668176
Alignment:
| Q |
146 |
ttgaagtacaatttccttgatgccttaaccatgttggcttacattttcttcctcgtagccaat-----tgttcttagtcttttgatacccacctttcaac |
240 |
Q |
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||||||| || |||||||| ||| ||||||||||||| || ||||||||| ||||||| ||| || |||||| |||||||| | | ||||||||| |
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| T |
27668340 |
ttgaagtgcagtttccttgttgctttaaccatgttggtttccattttctttctcgtagacaacgtaaatggtcttagccttttgatcctcgcctttcaac |
27668241 |
T |
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| Q |
241 |
tccacactccaaccattttaccttgactcctccaacatgactaacctcaataccgaagcccttgat |
306 |
Q |
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||||||| | || ||||| | ||||||||| |||||| |||||||||||||| |||||| ||||| |
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| T |
27668240 |
tccacacccaaatcattt-atcttgactccgtcaacatcactaacctcaatactgaagccgttgat |
27668176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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