View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_26 (Length: 330)
Name: NF13059_low_26
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 162 - 310
Target Start/End: Complemental strand, 27668321 - 27668173
Alignment:
| Q |
162 |
ttgctttaaccatgttggtttacattttctttctcgtagacaacgtaaatggtcttggccttttgatcctcgcctttcaactccacacccaaatcattta |
261 |
Q |
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| T |
27668321 |
ttgctttaaccatgttggtttccattttctttctcgtagacaacgtaaatggtcttagccttttgatcctcgcctttcaactccacacccaaatcattta |
27668222 |
T |
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| Q |
262 |
tcttgactccgtcaacatcactaacctcaatactgaagtcgttgattta |
310 |
Q |
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| T |
27668221 |
tcttgactccgtcaacatcactaacctcaatactgaagccgttgattta |
27668173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 27668575 - 27668417
Alignment:
| Q |
1 |
agaaattgtactaacgacgaatctcaatttatcagatca---------tcttcaaacaaaatctcaaaaaactaacgttactccgataattcgagattcg |
91 |
Q |
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| T |
27668575 |
agaaattgtacgaatgacgaatctcaatttatcagatcaacgttagtttcttcaaactaaatctcaaaaaactaacgttactccgataatttgagattcg |
27668476 |
T |
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| Q |
92 |
tcattcaaacaagctctttgcacctttgttgaagtctttgcatggcatatcattcaagcat |
152 |
Q |
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| T |
27668475 |
tcattcaaacaagctcttt--acatttgttgaagcttttgcatggcatatcattcaagcat |
27668417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 27673541 - 27673626
Alignment:
| Q |
214 |
tcttggccttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaag |
299 |
Q |
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| T |
27673541 |
tcttagccttttgatacccacctttcaactcaacaccccaagcatttatcttgactccgtcaacataactaacctcaataccgaag |
27673626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 312
Target Start/End: Original strand, 27668773 - 27668864
Alignment:
| Q |
221 |
cttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaac |
312 |
Q |
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| T |
27668773 |
cttttgatacccacctttcaactccacactccaaccatttaccttgactcctccaacatcactaacctcaataccgaagcccttgatttaac |
27668864 |
T |
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