View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_27 (Length: 330)
Name: NF13059_low_27
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 3965264 - 3964945
Alignment:
| Q |
1 |
cttcaatcaagatcatcccatgagttgtctcttgctagggcttagttattagaaagagcaaggtatttatctataaaaaattgaaaatgacgtacaaatc |
100 |
Q |
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| T |
3965264 |
cttcaatcaagatcatcccatgagttgtctcttgctagggcttagttattagaaagagcaaggtatttatctataaaaaattgaaaatgacgtacaaatc |
3965165 |
T |
|
| Q |
101 |
aaatcaaaactgatcttaatcttccctcagccatttcacatcaaatattgaggttcaatataaggacatgcgaatactaatattaagatattcaaggnnn |
200 |
Q |
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| T |
3965164 |
aaatcaaaactgatcttaatcttccctcagccatttcacatcaaatattgaggttcaatataaggacatgcgaatactaatattaagatattcaaggaaa |
3965065 |
T |
|
| Q |
201 |
nnnngaggtgaaattagggtttgtcaacctgctacattgctggcaaaacctttgttgaagctctgaaatgagtacggaatgagccttagaatggttttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3965064 |
aaaagaggtgaaattagggtttgtcaacctgctacattgctggcaaaacctttgttgaagctctgaaatgagtacggaatgagccttagaatggttttca |
3964965 |
T |
|
| Q |
301 |
caaaccttatggcgcctatg |
320 |
Q |
| |
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||||||||||||||| |||| |
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| T |
3964964 |
caaaccttatggcgcttatg |
3964945 |
T |
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