View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13059_low_28 (Length: 315)

Name: NF13059_low_28
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13059_low_28
NF13059_low_28
[»] chr3 (1 HSPs)
chr3 (10-307)||(32686469-32686762)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 32686469 - 32686762
Alignment:
Q  10 atgaatgggcatactaacgagggtttcacctaacgaaagaggttagtcttctataatatgcatgattgaattaatatttgaattatgattgaataaaggg 109  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    ||||||||||||||||||||||||| ||||||||||    
T  32686469 atgaatgggcataccaacgagggtttcacctaacgaaagagattagtcttctataatatg----attgaattaatatttgaattatgatcgaataaaggg 32686564  T
Q  110 ttcatatttcatatttaacattgtttcaaatagaattatatatagtagataaaatatttgnnnnnnncaaattaagtggtgcaaactggcaaagcgttta 209  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||       |||||  ||||||||||||||||||||| ||||    
T  32686565 ttcatatttcatatctaacattgtttcaaatagaattatatatagtagataaaatatatgagaaaaacaaatacagtggtgcaaactggcaaagccttta 32686664  T
Q  210 tataatttataatatatttgtttagtcatttatgctaagctattacttaatggctatatttaggataactaggacaaagttatctatgctatttcatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32686665 tataatttataatatatttgtttagtcatttatgctaagctattaattaatggctatatttaggataactaggacaaagttatctatgctatttcatt 32686762  T

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