View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_29 (Length: 288)
Name: NF13059_low_29
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 39756516 - 39756783
Alignment:
| Q |
5 |
gagtgagatgaaaggttcctttttgtgttctccattcctcatgttaatgttaaaaaactcaaactcaatctgcttttcatacagagttgcagtaacccgc |
104 |
Q |
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| T |
39756516 |
gagtgatatgaacggttcctttttgtgttctccattcctcatgttaatgttaaaaaactcaaactcaatctgcttttcatacagagttgcagtaacccgc |
39756615 |
T |
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| Q |
105 |
atggtggccgttgagtagggacttccatggacttttattgttgccatgatttacaagattaatcgatcacaagattaatgtattgttcttatttaacttt |
204 |
Q |
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| T |
39756616 |
atggtggccgttgagtagggacttccatggacttttattgttgccatgatttacaagattaatcgatcacaagattaatttattgttcttaattaacttt |
39756715 |
T |
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| Q |
205 |
ggtaagttttagcattaaatgataatagc-ttgatggttatatagtaagatggatagattggaaagtg |
271 |
Q |
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| T |
39756716 |
ggtaagttgtagaattaaatgataatagctttgatggttatatagtaagatggatagattggaaagtg |
39756783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 271
Target Start/End: Original strand, 39761870 - 39762137
Alignment:
| Q |
5 |
gagtgagatgaaaggttcctttttgtgttctccattcctcatgttaatgttaaaaaactcaaactcaatctgcttttcatacagagttgcagtaacccgc |
104 |
Q |
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| T |
39761870 |
gagtgatatgaacggttcctttttgtgttctccattcctcatgttaatgttaaaaaactcaaactcaatctgcttttcatacagagttgcagtaacccgc |
39761969 |
T |
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| Q |
105 |
atggtggccgttgagtagggacttccatggacttttattgttgccatgatttacaagattaatcgatcacaagattaatgtattgttcttatttaacttt |
204 |
Q |
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| T |
39761970 |
atggtggccgttgagtagggacttccatggacttttattgttgccatgatttacaagattaatcgatcacaagattaatttattgttcttaattaacttt |
39762069 |
T |
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| Q |
205 |
ggtaagttttagcattaaatgataatagc-ttgatggttatatagtaagatggatagattggaaagtg |
271 |
Q |
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| T |
39762070 |
ggtaagttgtagaattaaatgataatagctttgatggttatatagtaagatggatagattggaaagtg |
39762137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 5 - 156
Target Start/End: Original strand, 39771287 - 39771438
Alignment:
| Q |
5 |
gagtgagatgaaaggttcctttttgtgttctccattcctcatgttaatgttaaaaaactcaaactcaatctgcttttcatacagagttgcagtaacccgc |
104 |
Q |
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| T |
39771287 |
gagtgatatgaagggttcctttttgtgttcaccattcctcatgttaatgcttacaaactcaaattcaagctccttttcatacaaagttgcagtaacccgc |
39771386 |
T |
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| Q |
105 |
atggtggccgttgag-tagggacttccatggacttttattgttgccatgattt |
156 |
Q |
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| T |
39771387 |
atggtggccgttgagataggg-cttccgtgcacttttattgttgccatgattt |
39771438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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