View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_33 (Length: 255)
Name: NF13059_low_33
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15750929 - 15751169
Alignment:
| Q |
1 |
tctcttttcaaaatcattttcaagccaaa-gatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctttgcta |
99 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15750929 |
tctcttttcaaaatcattttcaagccaaaagatagtgatgttgttgttgcctctatgccaaaaactggaacaacatggttgaaagccctaacctttgcta |
15751028 |
T |
|
| Q |
100 |
ttgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgtttatgttga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15751029 |
ttgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgtgtatgttga |
15751128 |
T |
|
| Q |
200 |
taccatttctcagtttcctaaatttgatatattaaacatga |
240 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
15751129 |
taccatttcccagtttcctaagtttgatatattaaacatga |
15751169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 2 - 195
Target Start/End: Complemental strand, 4506945 - 4506752
Alignment:
| Q |
2 |
ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctttgctatt |
101 |
Q |
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|||||||||||||||||||||||||||||| | |||| |||||||||| | | |||||||| || ||||| ||||||||||| || || ||||| ||| |
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| T |
4506945 |
ctcttttcaaaatcattttcaagccaaagacaatgatattgttgttgctagcttaccaaaatccggcacaacttggttgaaagcactcacatttgccatt |
4506846 |
T |
|
| Q |
102 |
gttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgtttatg |
195 |
Q |
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| T |
4506845 |
gttaatcgtcatcatttctcttccttagaagatcatccattacttaaattcaattcacatgaactagtgcctttctttgaatacaatgtttatg |
4506752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15169215 - 15169167
Alignment:
| Q |
1 |
tctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgc |
49 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
15169215 |
tctcttttcaaaatcattttcaagccaaagatagtgatattgttgttgc |
15169167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 15047526 - 15047630
Alignment:
| Q |
2 |
ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctttgctatt |
101 |
Q |
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|
||||||||||||| ||||| | |||||||| ||||||||| | ||||| | ||||||||| | || || ||||||||||||||||| | ||||||||| |
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| T |
15047526 |
ctcttttcaaaattattttaaggccaaagagagtgatgttttcattgcctccatgccaaaagcaggcaccacatggttgaaagcccttgcatttgctatt |
15047625 |
T |
|
| Q |
102 |
gttaa |
106 |
Q |
| |
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||||| |
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|
| T |
15047626 |
gttaa |
15047630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 15066508 - 15066573
Alignment:
| Q |
2 |
ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg |
67 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||| |||| ||||| | |||||||||||||| |
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| T |
15066508 |
ctcttttcaaaataattttcatgccaaagatagtgatattgtagttgcatccatgccaaaatctgg |
15066573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 14999933 - 14999993
Alignment:
| Q |
2 |
ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaa |
62 |
Q |
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|
|||||||| |||| |||||||| ||||||||||||||||| ||||||| | ||||||||| |
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| T |
14999933 |
ctcttttcgaaataattttcaaaccaaagatagtgatgttattgttgcatccatgccaaaa |
14999993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 13033179 - 13033242
Alignment:
| Q |
4 |
cttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg |
67 |
Q |
| |
|
||||||||||| | ||||| |||||||| | |||| |||||||||| |||||||||||||||| |
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|
| T |
13033179 |
cttttcaaaataaatttcatgccaaagacaatgatattgttgttgcatctatgccaaaatctgg |
13033242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 15214935 - 15214870
Alignment:
| Q |
2 |
ctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctgg |
67 |
Q |
| |
|
||||||||||||| ||||||| || ||||| |||||| |||||||||| | || ||||||||||| |
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| T |
15214935 |
ctcttttcaaaataattttcatgctaaagacagtgatattgttgttgcatccattccaaaatctgg |
15214870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1618557 - 1618318
Alignment:
| Q |
1 |
tctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctttgctat |
100 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
1618557 |
tctcttttcaaaatgattttcaagctaaagatagtgatgttgttattgcctctatgccaaaatcaggaacaacatggttgaaagccctaacctttgcaat |
1618458 |
T |
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| Q |
101 |
tgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaacttgtgccttccttggaatcaaatgtttatgttgat |
200 |
Q |
| |
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| ||||||| ||| ||| ||||| ||||||||||||||||||||| | ||||| |||||||| | | |||| ||| |||| || ||||||||||| |
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| T |
1618457 |
tattaatcgccatcatttttcttccctagagaatcatccattacttaaaactaatcctcatgaattaatacctttctttgaatttcatatttatgttgat |
1618358 |
T |
|
| Q |
201 |
accatttctcagtttcctaaatttgatatattaaacatga |
240 |
Q |
| |
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||| ||| ||| ||||||||| ||||| |||||||||||| |
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| T |
1618357 |
accgtttgtcaatttcctaaagttgatctattaaacatga |
1618318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 1627122 - 1626959
Alignment:
| Q |
1 |
tctcttttcaaaatcattttcaagccaaagatagtgatgttgttgttgccactatgccaaaatctggaacaacatggttgaaagccctaacctttgctat |
100 |
Q |
| |
|
||||||||||||| || |||||||| || ||||||||||| |||||||||||| | |||||||| |||||||||||||||||||||||||||||||| || |
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| T |
1627122 |
tctcttttcaaaaccactttcaagctaaggatagtgatgtggttgttgccactgttccaaaatcaggaacaacatggttgaaagccctaacctttgccat |
1627023 |
T |
|
| Q |
101 |
tgttaatcgtaatcgtttctcttctttagagaatcatccattacttacatctaattctcatgaa |
164 |
Q |
| |
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| ||||||| ||| ||||||||||||| | ||||||||||| |||||||||||| |||||||| |
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| T |
1627022 |
tattaatcgccatcatttctcttctttacataatcatccattgcttacatctaatcctcatgaa |
1626959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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