View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_34 (Length: 255)
Name: NF13059_low_34
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 4569803 - 4569586
Alignment:
| Q |
33 |
ggcatcaaattcaaaagtaacagcttgaaattggatagttattcttgtttttgattaaaggaggtaaagattatcattacgtatgcaaagtatcaattca |
132 |
Q |
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| T |
4569803 |
ggcatcaaattcaaaagtaacagcttgaaattggatagttactcttgtttataattaaaggaggtaaagattatcattacgtatgcaaagtatcaattca |
4569704 |
T |
|
| Q |
133 |
acataaaaattaatagtttgagacaacacaaaaatagaacagggaccaacaaagaaaagggcattattatagattagcaagaaaatatagagattaattc |
232 |
Q |
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||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
4569703 |
acataaaaattaatagtctgagacaaaacaaaaatagaagagggaccaacaaagaaaagggcattattatagatgagcaagcaaatatagagattaattc |
4569604 |
T |
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| Q |
233 |
ttattcctttcttctcac |
250 |
Q |
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||||||||| ||| |||| |
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| T |
4569603 |
ttattccttccttatcac |
4569586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 49059070 - 49058875
Alignment:
| Q |
18 |
attgaccaccacctaggcatcaaattcaaaagtaacagcttgaaattggatag-ttattcttgtttttgattaaaggaggtaaagattatcattacgtat |
116 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||| || |||| || ||||||||| | |
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| T |
49059070 |
attgaccaccacctagccatctaattcaaaagtaacagcttgaaaattgataggttattcttgtttttgattaaagaagataaaaataatcattacgctt |
49058971 |
T |
|
| Q |
117 |
gcaaagtatcaattcaacataaaaattaatagtttgagacaacacaaa-aatagaacagggaccaacaaagaaaagggcattattatagattagca |
211 |
Q |
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| T |
49058970 |
gcaaagtatgaattcaacataaaaattaatagtttgaaacaaaacaaagtatagaagagcgaccaacaaagaaaagtgctttattatagatcagca |
49058875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 14704873 - 14704736
Alignment:
| Q |
115 |
atgcaaagtatcaattcaacataaaaattaatagttt--gagacaacacaaaaatagaacagggaccaacaaagaaaagggcattattatagattagcaa |
212 |
Q |
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|||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||| ||||| |
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| T |
14704873 |
atgcaaagtatcaattgaacataaagattaatagtttatgagacaaaacaaaaatagaagagagaccaacaaagaaaagggcattattatagatgagcaa |
14704774 |
T |
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| Q |
213 |
gaaaatatagagattaattcttattcctttcttctcac |
250 |
Q |
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| T |
14704773 |
gcaaatatagagattaattcttattccttccttatcac |
14704736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 49049360 - 49049302
Alignment:
| Q |
83 |
ttgattaaaggaggtaaagattatcattacgtatgcaaagtatcaattcaacataaaaa |
141 |
Q |
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||||||||||||| |||| ||||||| |||| ||| |||||||||| |||||| ||||| |
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| T |
49049360 |
ttgattaaaggagataaaaattatcactacgcatgaaaagtatcaaatcaacaaaaaaa |
49049302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 9777771 - 9777952
Alignment:
| Q |
30 |
ctaggcatcaaattcaaaagtaacagcttgaaattggatagttattcttgtttttgattaaaggaggtaaagattatcattacgtatgcaaagtatcaat |
129 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||| |||||||||||| |||||||||||||| |
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| T |
9777771 |
ctaggcatctaattcaaaagtaacagcttgaaattggatagttattcttgttcttgattagagaagataaaaattatcattacgcttgcaaagtatcaat |
9777870 |
T |
|
| Q |
130 |
tcaacataaaaattaatagtttgagacaacacaaaaatagaacagggaccaacaaagaaaagggcattattatagattagca |
211 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||| || |||||| ||||||||| | ||||||||||| |||| |
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| T |
9777871 |
tcaacataaaaactaatagtttgagacaaaacaagtatagaagagtgaccaagaaagaaaagtgttttattatagatcagca |
9777952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 22643304 - 22643209
Alignment:
| Q |
116 |
tgcaaagtatcaattcaacataaaaattaatagtttgagacaacacaaaaatagaacagggaccaacaaagaaaagggcattattatagattagca |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| || |||| |||||| |||| |
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| T |
22643304 |
tgcaaagtatcaattcaacataaaaattaatagtttgagacagaacaagtatagaagagggaccaacaaagaaaaatgctttatcatagatcagca |
22643209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 22643614 - 22643577
Alignment:
| Q |
18 |
attgaccaccacctaggcatcaaattcaaaagtaacag |
55 |
Q |
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||||||||||||||||| ||| |||||||||||||||| |
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| T |
22643614 |
attgaccaccacctaggaatctaattcaaaagtaacag |
22643577 |
T |
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