View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13059_low_36 (Length: 243)
Name: NF13059_low_36
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_36 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 226
Target Start/End: Complemental strand, 13134538 - 13134322
Alignment:
| Q |
10 |
agatgaagccagagaagaattgttaccgtggagtgaggtttagacttggaaggtggggattgggtatgtgcttgtgcagcctcaagatgagagagagatt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13134538 |
agatgaagccagagaagaattgttaccgtggagtgaggtttagacttggaaggtggggattgggtatgtgcttgtgcagcctcaagatgagagagagatt |
13134439 |
T |
|
| Q |
110 |
gatgaagtgaacgaaacttttcccagtggtagcaacatgagaagataccacttaagctgaagatgatgagcaagaggagagcagtacctagtgggaaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13134438 |
gatgaagtgaacgaaacttttcccagtggtagcaacatgagaagataccacttaagctgaagatgatgagcaagaggagagcagtacctagtgggaaacc |
13134339 |
T |
|
| Q |
210 |
gagggacggtcgagatg |
226 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
13134338 |
gagggacggtcgagatg |
13134322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 68 - 199
Target Start/End: Original strand, 30237169 - 30237300
Alignment:
| Q |
68 |
attgggtatgtgcttgtgcagcctcaagatgagagagagattgatgaagtgaacgaaacttttcccagtggtagcaacatgagaagataccacttaagct |
167 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30237169 |
attgagtatgtgcttgtggagactcaagatgagagagagattgatgaagtgaaagaaacttttcccagtggtagcaacatgagaagataccacttaagct |
30237268 |
T |
|
| Q |
168 |
gaagatgatgagcaagaggagagcagtaccta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
30237269 |
gaagatgatgagcaagaggagagcagtaccta |
30237300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 130 - 226
Target Start/End: Complemental strand, 28232814 - 28232718
Alignment:
| Q |
130 |
tcccagtggtagcaacatgagaagataccacttaagctgaagatgatgagcaagaggagagcagtacctagtgggaaaccgagggacggtcgagatg |
226 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| ||||| || ||||||| |||||| || ||||| || | |||||||| ||||| |||||||||| |
|
|
| T |
28232814 |
tcccaatggtagcaacaagagaggataccactcaagctaaaaatgatgatcaagagaagggcagtgcccaaagggaaaccaagggatggtcgagatg |
28232718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University