View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13059_low_5 (Length: 626)
Name: NF13059_low_5
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_5 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
| [»] scaffold0068 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Complemental strand, 35220659 - 35220134
Alignment:
| Q |
18 |
acaacagcagcaacaaaaccaaaggtttaagtggcagaaaccaagcgcaggtagattcaaatgtaaaatagatgcttcctttccaatcaacaacaaccga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
35220659 |
acaacagcagcaacaaaaccaaaggtttaagtggcagaaaccaagcgcaggtagattcaaatgtaacatagacaattcctttccaatcaacaacaaccga |
35220560 |
T |
|
| Q |
118 |
gtgggtattgacgtatgtattagagacgaggaaggcgtgtttgtgattgcaaaaacggaatgatttgagcacaagcatgaggtgcatattggagaagctt |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35220559 |
gtgggtattgacatatgtattagagacgaggaaggcgtgtttgtgattgcaaaaacggaatggtttgagcacaagcatgaggtgcatattggagaagctt |
35220460 |
T |
|
| Q |
218 |
tgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttgtcgacagctttgcctctaa |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
35220459 |
tgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgactcaaagacggttgtcgacaactttgcctctaa |
35220360 |
T |
|
| Q |
318 |
caagcaagattatacggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagacaa |
417 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35220359 |
caagcaaaattatacggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagtattatgaaaactctagtgttgagtttgtacggagacaa |
35220260 |
T |
|
| Q |
418 |
gcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttaattgtattgaacacattttgacta |
517 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35220259 |
gcaaacgagattgcccataagttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttgattgtattgaacacattttgacta |
35220160 |
T |
|
| Q |
518 |
gtgaaatgatataacatatcttcttt |
543 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35220159 |
gtgaaatgatataacatatcttcttt |
35220134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 474
Target Start/End: Complemental strand, 7072662 - 7072570
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccag |
474 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||| |||| ||| ||||||||||| | || ||||||||||| ||||||| |
|
|
| T |
7072662 |
tatgaaaactctagtgttgagtttgtgcagagacaatcaaatgaggttgctcatgagttagcaaaggcgaccacattgtcagctaatttccag |
7072570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 467
Target Start/End: Original strand, 24177703 - 24177789
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||||| ||||| |||| |||| ||| |||||||| |
|
|
| T |
24177703 |
ttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag |
24177789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 4084519 - 4084610
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttcca |
473 |
Q |
| |
|
||||||||||| |||| |||||||| | |||||||||||||||| |||| |||| |||||||| | |||| | || |||||||||||||| |
|
|
| T |
4084519 |
tatgaaaactcacgtgtcgagtttgtgcggagacaagcaaacgaggttgctcataatttagcaaaagcggccttgttatcagctagtttcca |
4084610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 543
Target Start/End: Complemental strand, 5562122 - 5561606
Alignment:
| Q |
18 |
acaacagcagcaacaaaaccaaaggtttaagtggcagaaaccaagcgcaggtagattcaaatgtaaaatagatgcttcctttccaatcaacaacaaccga |
117 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| | |||| |||||||| || |||||||| |
|
|
| T |
5562122 |
acaacagcagcaacaaaaccaaaggattaagtggcagaaaccaagcacaggtagattcaaatgtaacatacacgcttactttccaaataatgacaaccga |
5562023 |
T |
|
| Q |
118 |
gtgggtattgacgtatgtattagagacgaggaaggcgtgtttgtgattgcaaaaacggaatgatttgagcacaagcatgaggtgcatattggagaagctt |
217 |
Q |
| |
|
|||||||||| | |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||| | |
|
|
| T |
5562022 |
gtgggtattggcatatg--------acgaggaaggcgtgtttgtgcttgcaaaaacggaatggtttgagcacaagcacgagatgcatattggagaagcgt |
5561931 |
T |
|
| Q |
218 |
tgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttgtcgacagctttgcctctaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
5561930 |
tgggtttgttatcagctcttcaatgggttcatgacttgaggttaggaccaatagactttgatcttgactcaaagaaggttgtcgacagctttgcctctaa |
5561831 |
T |
|
| Q |
318 |
caagcaagattatacggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagacaa |
417 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
5561830 |
caagaaagatcatatggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagtattatgaaaattctagtgttgagtttgtacggagacaa |
5561731 |
T |
|
| Q |
418 |
gcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttaattgtattgaacacattttgacta |
517 |
Q |
| |
|
||||| ||| ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||| |
|
|
| T |
5561730 |
gcaaatgaggttgcccataagttagcaaaggcggccctattgtcagctagtttccagctcctagttga-ccacttgattgtattgaacacattttgacta |
5561632 |
T |
|
| Q |
518 |
gtgaaatgatataacatatcttcttt |
543 |
Q |
| |
|
|||||||||||||| || |||||||| |
|
|
| T |
5561631 |
gtgaaatgatataagatctcttcttt |
5561606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 65 - 531
Target Start/End: Original strand, 44328071 - 44328537
Alignment:
| Q |
65 |
caggtagattcaaatgtaaaatagatgcttcctttccaatcaacaacaaccgagtgggtattgacgtatgtattagagacgaggaaggcgtgtttgtgat |
164 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
44328071 |
caggtagattcaaatgtaacacagacgcttcctttccaaaaaatgacaatcgagtgggtattgacatatgtattagagacgaggaaggcatgtttgtgat |
44328170 |
T |
|
| Q |
165 |
tgcaaaaacggaatgatttgagcacaagcatgaggtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatgaattgaggttagga |
264 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44328171 |
tgcaaaaacgaaatgtcttgagcacaagcatgaagtggatattagagaaatgttgggtttcttatcagctcttcaatgggttcatgaatcgaggttagga |
44328270 |
T |
|
| Q |
265 |
ccaatagactttgaacttgacttaaagacggttgtcgacagctttgcctctaacaagcaagattatacggaatatggtgctattatcaatgaatgtaaat |
364 |
Q |
| |
|
|||| |||||||||| | |||| | ||| ||||||||||| |||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44328271 |
ccaacagactttgaattagactcagagaaggttgtcgacaactttgcgtctgacatgcaagattatacagaatatggtgctattatcaatgaatgtaaat |
44328370 |
T |
|
| Q |
365 |
ccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagc |
464 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||| ||| ||| ||||| ||||||||||| ||| |||||||||| |
|
|
| T |
44328371 |
ccgtatttagtcactattatgaaaactctagtgttgagtttttacgaagacaagcaaatgaggttgtccataagttagcaaaggcggctctattgtcagc |
44328470 |
T |
|
| Q |
465 |
tagtttccagctcctagtggagccacttaattgtattgaacacattttgactagtgaaatgatataa |
531 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44328471 |
tagtttccagctcctaattgagccacttaattgtattgaacacattttgactagtgaaatgatataa |
44328537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 329 - 531
Target Start/End: Complemental strand, 17058934 - 17058732
Alignment:
| Q |
329 |
atacggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagat |
428 |
Q |
| |
|
||||||||| ||| |||||||| ||||| |||||| | ||||||| | | |||||||||||||||||||||||||| | |||||||||||| ||| | |
|
|
| T |
17058934 |
atacggaatttggagctattattaatgattgtaaaactttatttaggcaattatatgaaaactctagtgttgagtttgtgcggagacaagcaaatgaggt |
17058835 |
T |
|
| Q |
429 |
tgcccatatgttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttaattgtattgaacacattttgactagtgaaatgata |
528 |
Q |
| |
|
||| ||| ||||||||||| | || |||||||||||||||||| | | || ||||| |||||||||||||||||||| | || ||||||| || |
|
|
| T |
17058834 |
tgctcatgagttagcaaaggcgaccacattgtcagctagtttccaaattttggtcatgccaccaaattgtattgaacacattttaagtaatgaaatgcta |
17058735 |
T |
|
| Q |
529 |
taa |
531 |
Q |
| |
|
||| |
|
|
| T |
17058734 |
taa |
17058732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 467
Target Start/End: Original strand, 13503313 - 13503399
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||||| ||||| |||| |||| ||| |||||||| |
|
|
| T |
13503313 |
ttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag |
13503399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 453
Target Start/End: Original strand, 634719 - 634955
Alignment:
| Q |
217 |
ttgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttgtcgacagctttgcctcta |
316 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||| || ||||||| | ||||| || |||||||| | || | || || || ||||||| ||| |
|
|
| T |
634719 |
ttgggtttgttgacagctcttcaatgggtgcatgagttacagttaggaactatagagttcgaacttgattccaaaaaagtggttgatagctttggagcta |
634818 |
T |
|
| Q |
317 |
acaagcaagattatacggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagaca |
416 |
Q |
| |
|
| | ||| |||| ||||||| ||| |||||||| ||||| |||||| | | |||| | | | |||||||||||| ||||| |||||||| | |||||| |
|
|
| T |
634819 |
ataggcatgattcgacggaatttggagctattattaatgactgtaaaactttgtttaatcaattttatgaaaactcgagtgtagagtttgttcggagaca |
634918 |
T |
|
| Q |
417 |
agcaaacgagattgcccatatgttagcaaaggtggcc |
453 |
Q |
| |
|
|||||| ||| |||||||| |||||||||| |||| |
|
|
| T |
634919 |
agcaaatgaggttgcccatgaattagcaaaggcggcc |
634955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 27024138 - 27024097
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaac |
423 |
Q |
| |
|
||||||||||| |||||||||||||| | ||||||||||||| |
|
|
| T |
27024138 |
tatgaaaactcaagtgttgagtttgtgcggagacaagcaaac |
27024097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 32 - 543
Target Start/End: Original strand, 13501201 - 13501711
Alignment:
| Q |
32 |
aaaaccaaaggtttaagtggcagaaacc-aagcgcaggtagattcaaatgtaaaatagatgcttcctttccaatcaacaacaaccgagtgggtattgacg |
130 |
Q |
| |
|
||||||||||| || |||||||||||| |||| || |||||||||||||||| ||||| |||||||||||| || |||| ||||||||||||| | |
|
|
| T |
13501201 |
aaaaccaaagggtt--gtggcagaaacccaagcacatgtagattcaaatgtaacatagacacttcctttccaaataatgacaatcgagtgggtattggca |
13501298 |
T |
|
| Q |
131 |
tatgtattagagacgaggaaggcgtgtttgtgattgcaaaaacggaatgatttgagcacaagcatgaggtgcatattggagaagctttgggtttgttatc |
230 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
13501299 |
tatgtattagagacgaggaaggcgtatttgtgcttgcaaaaatggaatggtttgagcacaagcatgaggtgaatattggagaagcgttgggtttgttatc |
13501398 |
T |
|
| Q |
231 |
agctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttgtcgacagctttgcctctaacaagcaagattat |
330 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
|
|
| T |
13501399 |
agcttttcaatgggttcatgacttgaggttaggaccaatagactttgaacttgacttaaagaaggttgtcgacagctttgcctctaacaagcaagatcat |
13501498 |
T |
|
| Q |
331 |
acggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattg |
430 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||| ||||||| | ||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||| |
|
|
| T |
13501499 |
acgtaatatggtgctattattaatgaatgtaaatctgtatttaatcagtattatgaaaattctagtgttgagtttgtacggagacaagcaaatgaggttg |
13501598 |
T |
|
| Q |
431 |
cccatatgttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttaattgtattgaacacattttgactagtgaaatgatata |
530 |
Q |
| |
|
||||| ||||||||||| | || ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13501599 |
tccataagttagcaaaggcgaccctattgtcagcttgtttccagctcctagttgagccacttgattgtattgaacacattttgactagtgaaatgatata |
13501698 |
T |
|
| Q |
531 |
acatatcttcttt |
543 |
Q |
| |
|
| || |||||||| |
|
|
| T |
13501699 |
agatctcttcttt |
13501711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 379 - 468
Target Start/End: Original strand, 32663690 - 32663779
Alignment:
| Q |
379 |
tattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagt |
468 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||| |||||||| |||| ||||| ||| |||| |||||||| ||||| |
|
|
| T |
32663690 |
tattatgaaaactcgactgttgagtttgtacggagacaagcaaatgagattgctcataaattagctaagacggccttattgtcaactagt |
32663779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 474
Target Start/End: Complemental strand, 17777960 - 17777865
Alignment:
| Q |
379 |
tattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccag |
474 |
Q |
| |
|
|||||||||||||| | ||| |||||||||| |||||||||||| ||||||| |||| ||||| |||| |||| |||||||| ||||| ||||| |
|
|
| T |
17777960 |
tattatgaaaactcgactgtagagtttgtacggagacaagcaaataagattgctcataaattagctaaggcggccttattgtcaactagtctccag |
17777865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 467
Target Start/End: Original strand, 54781845 - 54781931
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||||| ||| ||| ||||| ||||| ||||||||| ||| |||||||| |
|
|
| T |
54781845 |
ttatgaaaactcatgtgttgagtttgtacggaggcaagcaaatgaggttgtccatagtttagctaaggtggccttatcttcagctag |
54781931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 10673286 - 10673337
Alignment:
| Q |
199 |
gtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatg |
250 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10673286 |
gtgcatgttggagaagctttaggtttgttgtcggctcttcaatgagttcatg |
10673337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 10698869 - 10698818
Alignment:
| Q |
199 |
gtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatg |
250 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10698869 |
gtgcatgttggagaagctttaggtttgttgtcggctcttcaatgagttcatg |
10698818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 10886926 - 10886977
Alignment:
| Q |
199 |
gtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatg |
250 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10886926 |
gtgcatgttggagaagctttaggtttgttgtcggctcttcaatgagttcatg |
10886977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 250
Target Start/End: Complemental strand, 10912639 - 10912588
Alignment:
| Q |
199 |
gtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatg |
250 |
Q |
| |
|
|||||| ||||||||||||| |||||||| || ||||||||||| ||||||| |
|
|
| T |
10912639 |
gtgcatgttggagaagctttaggtttgttgtcggctcttcaatgagttcatg |
10912588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 135 - 531
Target Start/End: Original strand, 28543924 - 28544320
Alignment:
| Q |
135 |
tattagagacgaggaaggcgtgtttgtgattgcaaaaacggaatgatttgagcacaagcatgaggtgcatattggagaagctttgggtttgttatcagct |
234 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28543924 |
tattagagacgaggaaggcacgtttgtgcttgcaaaaacggaatgtttttagcacaagcatggggtgcatattggagaagcgttgggtttgttatcagct |
28544023 |
T |
|
| Q |
235 |
cttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttgtcgacagctttgcctctaacaagcaagattatacgg |
334 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28544024 |
cttcaatggattcatgaattgaggttaagaccaatatacttttaacttgactcaaagaaggttgtcaacagctttgcctctaacaagcaagattatacgg |
28544123 |
T |
|
| Q |
335 |
aatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgccca |
434 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||| || |
|
|
| T |
28544124 |
aatatggtgctattatccatgaatgtaaatccgtatttagtcagtattatgtaaactctagtgttgagtttgtacgaagacaagcaaatgaggttgctca |
28544223 |
T |
|
| Q |
435 |
tatgttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttaattgtattgaacacattttgactagtgaaatgatataa |
531 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28544224 |
taagttagcaaaggtagccctattgtcagctagtttccagctcctaattgagccacttgattgtattgaacacattttgactagtgaaatgatataa |
28544320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 467
Target Start/End: Original strand, 21505008 - 21505094
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||||| ||||| |||| |||| ||| |||||||| |
|
|
| T |
21505008 |
ttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag |
21505094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 181 - 543
Target Start/End: Original strand, 29991881 - 29992242
Alignment:
| Q |
181 |
tttgagcacaagcatgaggtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaac |
280 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
29991881 |
tttgagcacaaggatgaggtgcatattggagaagcgttgggtttgttatcagctcttcaatgggttcatgacttgaggttagaaccaatagactttgaac |
29991980 |
T |
|
| Q |
281 |
ttgacttaaagacggttgtcgacagctttgcctctaacaagcaagattatacggaatatggtgctattatcaatgaatgtaaatccgtatttagttagta |
380 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29991981 |
ttgactcaaagaaggttgtcgacagctttgcctctagcaagcaagatcatacggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagta |
29992080 |
T |
|
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccagctccta |
480 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29992081 |
ttatgaaaactcttgtgttgagtttgtacggagacaagcaaatgaggttgcccataagttagcaaaggtggccctattgtcagctagtttccagctccta |
29992180 |
T |
|
| Q |
481 |
gtggagccacttaattgtattgaacacattttgactagtgaaatgatataacatatcttcttt |
543 |
Q |
| |
|
|| ||||||||| ||||||||||||| |||||||||||||||| ||||||| || |||||||| |
|
|
| T |
29992181 |
gttgagccacttgattgtattgaacatattttgactagtgaaa-gatataagatctcttcttt |
29992242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 381 - 467
Target Start/End: Original strand, 22849517 - 22849603
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||||| ||||| |||| |||| ||| |||||||| |
|
|
| T |
22849517 |
ttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccatagtttagctaaggcggccttatcttcagctag |
22849603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 473
Target Start/End: Complemental strand, 19934180 - 19933906
Alignment:
| Q |
199 |
gtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttg |
298 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||||||||||| ||||| || ||||||| | ||||| || |||||||| | || | || | |
|
|
| T |
19934180 |
gtgcatattggtgaaacattgggtttgttgacagctcttcaatgggtgcatgagttacagttaggaactatagagttcgaacttgattccaaaaaagtgg |
19934081 |
T |
|
| Q |
299 |
tcgacagctttgcctctaacaagcaagattatacggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgt |
398 |
Q |
| |
|
| || |||| || |||| | ||| |||| ||||||| ||| |||||||| ||||| |||||| | | |||| | | | |||||||||||| ||||| |
|
|
| T |
19934080 |
ttgatagctatggagctaataggcatgattcgacggaatttggagctattattaatgactgtaaaactttgtttaatcatttttatgaaaactcgagtgt |
19933981 |
T |
|
| Q |
399 |
tgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttcca |
473 |
Q |
| |
|
|||||||| | |||||||||||| ||| ||||||| |||||||||| ||| ||| || ||||||||||| |
|
|
| T |
19933980 |
agagtttgttcggagacaagcaaatgaggctgcccatgaattagcaaaggctgccacattatcggctagtttcca |
19933906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 10944221 - 10944264
Alignment:
| Q |
379 |
tattatgaaaactctagtgttgagtttgtacagagacaagcaaa |
422 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
10944221 |
tattatgaaaactcgacggttgagtttgtacagagacaagcaaa |
10944264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 10950090 - 10950133
Alignment:
| Q |
379 |
tattatgaaaactctagtgttgagtttgtacagagacaagcaaa |
422 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
10950090 |
tattatgaaaactcgacggttgagtttgtacagagacaagcaaa |
10950133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 24448574 - 24448455
Alignment:
| Q |
195 |
tgaggtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacg |
294 |
Q |
| |
|
|||||||||||||| | ||||||| ||| | || || |||||||||||||| |||| || || ||||||| ||||| ||||||||||| | ||||| | |
|
|
| T |
24448574 |
tgaggtgcatattgaaaaagctttaggtctattgtcggctcttcaatgggtccatgcgttaagtctaggaccgatagattttgaacttgattcaaagaag |
24448475 |
T |
|
| Q |
295 |
gttgtcgacagctttgcctc |
314 |
Q |
| |
|
| || ||||| |||||||| |
|
|
| T |
24448474 |
ctggttgacagttttgcctc |
24448455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 26370458 - 26370553
Alignment:
| Q |
379 |
tattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccag |
474 |
Q |
| |
|
|||||||||||||| | |||||||||||| | ||| |||||||| ||| |||| |||| ||||| |||| ||| |||||||| ||||| ||||| |
|
|
| T |
26370458 |
tattatgaaaactcgactgttgagtttgtgcggaggcaagcaaatgaggttgctcataaattagctaaggcagccttattgtcaactagtctccag |
26370553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 27635140 - 27635183
Alignment:
| Q |
379 |
tattatgaaaactctagtgttgagtttgtacagagacaagcaaa |
422 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
27635140 |
tattatgaaaactcgactgttgagtttgtacggagacaagcaaa |
27635183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Complemental strand, 33845755 - 33845701
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccata |
436 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||||| ||| |||| |||| |
|
|
| T |
33845755 |
tatgaaaactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctcata |
33845701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 474
Target Start/End: Complemental strand, 3981852 - 3981759
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccag |
474 |
Q |
| |
|
|||||||||||||||||| |||||| | | ||||||||| || ||| |||||||| ||||| |||| |||| || ||||||||||||||| |
|
|
| T |
3981852 |
ttatgaaaactctagtgtggagtttattcggagacaagcgaatgaggttgcccatgaattagctaaggcggcctcatcatcagctagtttccag |
3981759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 19276223 - 19276167
Alignment:
| Q |
456 |
attgtcagctagtttccagctcctagtggagccacttaattgtattgaacacatttt |
512 |
Q |
| |
|
||||||||||||||| ||| || | || |||||||| | |||||||||||||||||| |
|
|
| T |
19276223 |
attgtcagctagttttcagatcttggtcgagccactaagttgtattgaacacatttt |
19276167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 110 - 531
Target Start/End: Complemental strand, 25586285 - 25585863
Alignment:
| Q |
110 |
acaaccgagtgggtattgacgtatgtattagagacgaggaaggcgtgtttgtgattgcaaaaacggaatgatttgagcacaagcatgaggtgcatattgg |
209 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||| || |||||| ||||||| ||| || | |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
25586285 |
acaaccgagtggatattggtgtatgtattatagatgaagaaggcacgtttgtgcttgtgaagaaggaatgttttgagcacaagcatgaggtgcatatttg |
25586186 |
T |
|
| Q |
210 |
agaagctttgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttgtcgacagcttt |
309 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
25586185 |
agaagcgttgggtttgttatcagctattcaatgggttcatgaattg--gttagcatcaatagactttgaacttgactcgaagaaggttgtcgacagcttt |
25586088 |
T |
|
| Q |
310 |
gcctctaacaagcaagattatacggaatatggtgctattatcaatgaatgtaa----atccgtatttagttagtattatgaaaactctagtgttgagttt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25586087 |
gcctctaacaagcaagattatacggaatatggtgctattattaatgaatgtaattaaatcc-tatttagttagtattatgaaaactctggtgttgagttt |
25585989 |
T |
|
| Q |
406 |
gtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttaattgtattgaac |
505 |
Q |
| |
|
|||| |||||||||||| ||| ||| ||||| ||||||||||| |||| |||| |||||||||||||||||| |||| ||||||||| |||||||||||| |
|
|
| T |
25585988 |
gtacggagacaagcaaatgaggttgtccataagttagcaaaggcggccctattatcagctagtttccagctcttagttgagccacttgattgtattgaac |
25585889 |
T |
|
| Q |
506 |
acattttgactagtgaaatgatataa |
531 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
25585888 |
acattttgactagtgaaatgatataa |
25585863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 453
Target Start/End: Original strand, 5583844 - 5584098
Alignment:
| Q |
199 |
gtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttgacttaaagacggttg |
298 |
Q |
| |
|
||||||||||| ||||| || |||||||| |||||||||||||||| ||||| || |||||| || ||||| || |||||||| | || | || | |
|
|
| T |
5583844 |
gtgcatattggtgaagcattaggtttgttgacagctcttcaatgggtgcatgagttacagttagggcctatagagttcgaacttgattccaaaaaagtgg |
5583943 |
T |
|
| Q |
299 |
tcgacagctttgcctctaacaagcaagattatacggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgt |
398 |
Q |
| |
|
| || ||||||| |||| | ||| |||| ||||||| ||| |||||||| ||||| |||||| | | |||| | | | ||||||||||| ||||| |
|
|
| T |
5583944 |
ttgatagctttggagctaataggcatgattcgacggaatttggagctattattaatgactgtaaaactttgtttaatcatttctatgaaaactcgagtgt |
5584043 |
T |
|
| Q |
399 |
tgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggcc |
453 |
Q |
| |
|
|||||||| | |||||||||||| | || ||||||| |||||||||| |||| |
|
|
| T |
5584044 |
agagtttgttcggagacaagcaaatgggactgcccatgaattagcaaaggcggcc |
5584098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 284
Target Start/End: Complemental strand, 20351484 - 20351399
Alignment:
| Q |
199 |
gtgcatattggagaagctttgggtttgttatcagctcttcaatgggttcatgaattgaggttaggaccaatagactttgaacttga |
284 |
Q |
| |
|
||||||||||| ||| | ||||||||||| |||||||||||||||| ||||| || ||||||| | ||||| || |||||||| |
|
|
| T |
20351484 |
gtgcatattggtgaaccattgggtttgttgacagctcttcaatgggtgcatgagttacagttaggatctatagagttcgaacttga |
20351399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 467
Target Start/End: Original strand, 21708479 - 21708564
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| |||||||| ||| |||| |||| ||||| || |||||| |||| |||||||| |
|
|
| T |
21708479 |
tatgaaaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctcatagtttagctaaagtggccttattatcagctag |
21708564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 469
Target Start/End: Original strand, 593738 - 593826
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtt |
469 |
Q |
| |
|
||||| |||||| |||| |||||||| | |||||||||||||||| |||| |||| |||||||| | |||| | || |||||||||| |
|
|
| T |
593738 |
ttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgaggttgctcataacttagcaaaagcggccttgttatcagctagtt |
593826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 333 - 531
Target Start/End: Complemental strand, 4424776 - 4424578
Alignment:
| Q |
333 |
ggaatatggtgctattatcaatgaatgtaaatccgtatttagttagtattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcc |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||| |
|
|
| T |
4424776 |
ggaatatggtgctattatcaatgaatgtaaatccgtatttagtcagtattataaaaactctagtgttgagtttgtacggagacaagcaaatgaggttgcc |
4424677 |
T |
|
| Q |
433 |
catatgttagcaaaggtggccgtattgtcagctagtttccagctcctagtggagccacttaattgtattgaacacattttgactagtgaaatgatataa |
531 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4424676 |
cataagttagcaaaggtggccctattgtcagctagtttccagctcctagtggagccacttgattgtattgaacacattttgactagtgaaatgatataa |
4424578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 473
Target Start/End: Original strand, 10543961 - 10544055
Alignment:
| Q |
379 |
tattatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttcca |
473 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||| ||| ||| |||| ||||| |||| | || |||||||| ||||| |||| |
|
|
| T |
10543961 |
tattatgaaaactcgactgttgagtttgtacggagacaagcaaatgaggttgttcataaattagctaaggcgaccttattgtcaactagtctcca |
10544055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 13523215 - 13523129
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||| |||||||| || ||||||||| ||||| |||| |||| ||| |||||||| |
|
|
| T |
13523215 |
ttatgtaaactcttgtgttgagtttgtacggaggcaagcaaatgatgttgcccatagtttagctaaggcggccttatcttcagctag |
13523129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 381 - 467
Target Start/End: Complemental strand, 13612750 - 13612664
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
||||| ||||||| ||||||||||||||| ||| |||||||| || ||||||||| ||||| |||| |||| ||| |||||||| |
|
|
| T |
13612750 |
ttatggaaactcttgtgttgagtttgtacggaggcaagcaaatgaagttgcccatagtttagctaaggcggccttatcttcagctag |
13612664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 380 - 474
Target Start/End: Original strand, 20491501 - 20491595
Alignment:
| Q |
380 |
attatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttccag |
474 |
Q |
| |
|
|||||||||| || | |||||||||||||| |||||||||||| ||| |||| |||| ||||| |||| |||| |||||||| ||||| ||||| |
|
|
| T |
20491501 |
attatgaaaagtcgactgttgagtttgtacggagacaagcaaatgaggttgctcataaattagctaaggcggccttattgtcaactagtctccag |
20491595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 5714735 - 5714770
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaa |
417 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5714735 |
tatgaaaactatagtgttgagtttgtacagagacaa |
5714770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 468
Target Start/End: Original strand, 20426011 - 20426090
Alignment:
| Q |
389 |
actctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagt |
468 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||| | || |||| ||||| |||| |||| | |||||||||||| |
|
|
| T |
20426011 |
actcaagtgttgagtttgtgcggagacaagcaaacgaggtcgctcataatttagctaaggcggccttgttgtcagctagt |
20426090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 22069835 - 22069926
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtttcca |
473 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||||| | || ||| |||| ||| |||| |||||| |||| |||||||||||||||||| |
|
|
| T |
22069835 |
tatgaaaactgtagtattgagtttgtgcggagacaaacgaatgaggttgctcatgagttaacaaaggcggccacattgtcagctagtttcca |
22069926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 469
Target Start/End: Complemental strand, 23264430 - 23264342
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtt |
469 |
Q |
| |
|
||||| |||||| |||| |||||||| | |||||||||||||||| |||| |||| |||||||| | |||| | || |||||||||| |
|
|
| T |
23264430 |
ttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgaggttgctcataacttagcaaaagcggccatgttatcagctagtt |
23264342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 469
Target Start/End: Complemental strand, 33906741 - 33906653
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctagtt |
469 |
Q |
| |
|
||||| |||||| |||| |||||||| | |||||||||||||||| |||| |||| |||||||| | |||| | || |||||||||| |
|
|
| T |
33906741 |
ttatgtaaactcacgtgtcgagtttgtgcggagacaagcaaacgaggttgctcataacttagcaaaagcggccttgttatcagctagtt |
33906653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 436
Target Start/End: Complemental strand, 203250 - 203195
Alignment:
| Q |
381 |
ttatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccata |
436 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| |||||||| ||| ||||||||| |
|
|
| T |
203250 |
ttatgaaaactcttgtgttgagtttgtacggaggcaagcaaatgaggttgcccata |
203195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 11026 - 11080
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccata |
436 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||||||| ||| |||| |||| |
|
|
| T |
11026 |
tatgaaaactctcgtgttgagtttgtacggaggcaagcaaatgaggttgctcata |
11080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 467
Target Start/End: Complemental strand, 5431 - 5346
Alignment:
| Q |
382 |
tatgaaaactctagtgttgagtttgtacagagacaagcaaacgagattgcccatatgttagcaaaggtggccgtattgtcagctag |
467 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| |||||||| ||| |||| |||| ||||| || |||||| |||| |||||||| |
|
|
| T |
5431 |
tatgaaaactctcatgttgagtttgtatggaggcaagcaaatgaggttgctcatagtttagctaaagtggccttattatcagctag |
5346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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