View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13059_low_6 (Length: 573)

Name: NF13059_low_6
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13059_low_6
NF13059_low_6
[»] chr4 (14 HSPs)
chr4 (271-544)||(26128684-26128957)
chr4 (271-553)||(26085393-26085675)
chr4 (271-553)||(26056156-26056438)
chr4 (271-553)||(26067818-26068100)
chr4 (271-544)||(26111730-26112003)
chr4 (271-539)||(26121257-26121533)
chr4 (1-191)||(26128398-26128607)
chr4 (271-517)||(26038251-26038497)
chr4 (29-191)||(26121034-26121176)
chr4 (320-377)||(26065545-26065602)
chr4 (509-553)||(26048989-26049033)
chr4 (386-490)||(26120847-26120951)
chr4 (306-349)||(26056610-26056653)
chr4 (54-103)||(26037997-26038046)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 271 - 544
Target Start/End: Original strand, 26128684 - 26128957
Alignment:
Q  271 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||    
T  26128684 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaactatgatgcatccagt 26128783  T
Q  371 aagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcatt 470  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||    
T  26128784 aagaactactatgattacagcggtaacaatctttgatatgcttagagaataagggttgttcttcatcaagggtccttctctttctctgtgctcaatcatt 26128883  T
Q  471 gtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatatagggttttgaag 544  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  26128884 gtatccaccaccacctcaaagattgagattgaaatggtagtattgtttagttctggttatatagggttctgaag 26128957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 271 - 553
Target Start/End: Original strand, 26085393 - 26085675
Alignment:
Q  271 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgt 370  Q
    |||||||||||||| |||||| ||| | | |||||||||||||||| ||||||||| |||||||||||||||||||| |||||| || ||||||||| |     
T  26085393 cctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaatagaaaactatgatgcatccagc 26085492  T
Q  371 aagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcatt 470  Q
    ||||||| |||||||||||| |||||  ||| ||||||||  |||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  26085493 aagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcatt 26085592  T
Q  471 gtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatatagggttttgaagttttggagg 553  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  26085593 gtatccaccaccaactcaaagactgagattgaaatggtagttttgttttgttctggttatatagggttttgaagctttggagg 26085675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 271 - 553
Target Start/End: Original strand, 26056156 - 26056438
Alignment:
Q  271 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgt 370  Q
    |||||||||||||| |||||| ||| | | ||||| |||||||||| || |||||| |||||||||| |||||||||||||||| || ||||||||| ||    
T  26056156 cctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaagaaaactatgatgcatccagt 26056255  T
Q  371 aagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcatt 470  Q
    ||||||| |||||||||||| |||||  ||| ||||||||  |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  26056256 aagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaagggtccttctctttctctgcgctcaatcatt 26056355  T
Q  471 gtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatatagggttttgaagttttggagg 553  Q
    |||| |||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  26056356 gtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttttgaagctttggagg 26056438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 271 - 553
Target Start/End: Original strand, 26067818 - 26068100
Alignment:
Q  271 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgt 370  Q
    |||||||||||||| |||||| ||| | | ||||| |||||||||| || |||||| |||||||||| |||||||||||||||| || ||||||||| ||    
T  26067818 cctgggtcttgggtacagcaacaggtaggtgacgatttgaggtaatagactgagaaacaaagaagtctttaggaaaaaagaaaactatgatgcatccagt 26067917  T
Q  371 aagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcatt 470  Q
    ||||||| |||||||||||| |||||  ||| ||||||||  |||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  26067918 aagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcatt 26068017  T
Q  471 gtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatatagggttttgaagttttggagg 553  Q
    |||| |||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||    
T  26068018 gtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttttgaagctttggagg 26068100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 271 - 544
Target Start/End: Original strand, 26111730 - 26112003
Alignment:
Q  271 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgt 370  Q
    |||||||||||||| |||||| ||| | | |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||  |    
T  26111730 cctgggtcttgggtacagcaacaggtaggtgacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaaaagaaaactatgatgcatccaat 26111829  T
Q  371 aagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcatt 470  Q
    ||||||| |||||||||||| |||||  ||| ||||||||  |||||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  26111830 aagaactccaatgattacagtggtaatgatccttgatatgagtagagattgagggctgttcttcatcaaaggtccttctctttctctgcgctcaatcatt 26111929  T
Q  471 gtatacaccaccacctcaaagattgagattgaaatggtagttttgtttagttctggttatatagggttttgaag 544  Q
    |||| |||||||| |||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  26111930 gtatccaccaccaactcaaagactgagattgaaatggaagttttgttttgttctggttatatagggttctgaag 26112003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 271 - 539
Target Start/End: Original strand, 26121257 - 26121533
Alignment:
Q  271 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgt 370  Q
    |||| |||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||  |    
T  26121257 cctgagtcttgggtccagcaaaagggaggagacgaattgaggtaatagattgagaaacaaagaagtcattaggaaaatagaaaagtaagatgcatccaat 26121356  T
Q  371 aagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcatt 470  Q
    ||||||| |||||||||||| |||||| ||  ||||||||  ||||||||||| |||||||||||||||| ||||||||||||||||  || ||||||||    
T  26121357 aagaactccaatgattacagtggtaacgattattgatatgagtagagaatgagagttgttcttcatcaagcgtccttctctttctctgagcccaatcatt 26121456  T
Q  471 gtatacaccaccacctcaaag------attgaga--ttgaaatggtagttttgtttagttctggttatatagggttt 539  Q
    |||| |||||| |||||||||      |||||||  |||| |||||| |||||||| ||||||||||| ||||||||    
T  26121457 gtatccaccactacctcaaagactgatattgagaatttgagatggtaattttgttttgttctggttatgtagggttt 26121533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 26128398 - 26128607
Alignment:
Q  1 taggaagcttcttcttcaatataattaaacaaatctgaaagtctgaagcttattatatgactatcaaattctgaaattttgagacaactaaaatcagtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26128398 taggaagcttcttcttcaatataattaaacaaatctgaaagtctgaagcttattatatgactatcaaattctgaaattttgagtcaactaaaatcagtaa 26128497  T
Q  101 gatcaaacacaatt-------------------cagcaagatgaaacgtagtatcacaatgactacaaaacaaaaacagtaaagtcagaagatataaatt 181  Q
    ||||||||||||||                   |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  26128498 gatcaaacacaattccacaatgacccacaaaagcagcaagatgaaacgtagtatcacaaagaccacaaaacaaaaacagtaaagtcaaaagatataaatt 26128597  T
Q  182 tggagtcaac 191  Q
    ||||||||||    
T  26128598 tggagtcaac 26128607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 271 - 517
Target Start/End: Original strand, 26038251 - 26038497
Alignment:
Q  271 cctgggtcttgggtccagcaaaagggaagagacgaattgaggtaatggattgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgt 370  Q
    ||||||| |||| |||| ||| || || | ||||| |||| ||||| ||||||||| |||||||| |||||||||||||||||  ||||||||||||  |    
T  26038251 cctgggttttggatccaacaacagcgatgcgacgatttgatgtaatagattgagaaacaaagaagccattaggaaaaaagaaagctaagatgcatccaat 26038350  T
Q  371 aagaactacaatgattacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcatt 470  Q
    ||||||  |||| | |||||| ||||| ||| ||||| ||| ||||||||||||||||||   ||| |||||||||||||||||||| ||| ||||||||    
T  26038351 aagaacaccaattactacagcagtaacgatccttgatttgcgtagagaatgagggttgtttcgcattaagggtccttctctttctctgcgcccaatcatt 26038450  T
Q  471 gtatacaccaccacctcaaagattgagattgaaatggtagttttgtt 517  Q
    |||   |||||||||||||||| ||||||||| ||||||||||||||    
T  26038451 gtagctaccaccacctcaaagactgagattgagatggtagttttgtt 26038497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 26121034 - 26121176
Alignment:
Q  29 acaaatctgaaagtctgaagcttattatatgactatcaaattctgaaattttgagacaactaaaatcagtaagatcaaacacaattcagcaagatgaaac 128  Q
    |||| |||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||                      
T  26121034 acaattctgaaagtctgaaacttaatatatgaccatcaaattctgaaattttgagtcaactaaaatcagtaagatcaaacac------------------ 26121115  T
Q  129 gtagtatcacaatgactacaaaacaaaaacagtaaagtcagaagatataaatttggagtcaac 191  Q
      |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  26121116 --agtatcacaatgaccacaaaacaaaaacagtaaagtcaaaagatataaatttcgagtcaac 26121176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 26065545 - 26065602
Alignment:
Q  320 ttgagaagcaaagaagtcattaggaaaaaagaaaagtaagatgcatcctgtaagaact 377  Q
    ||||||| ||||||||||||| ||||||||||||  ||||||||||||| ||||||||    
T  26065545 ttgagaaacaaagaagtcattgggaaaaaagaaagctaagatgcatcctataagaact 26065602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 509 - 553
Target Start/End: Original strand, 26048989 - 26049033
Alignment:
Q  509 agttttgtttagttctggttatatagggttttgaagttttggagg 553  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||    
T  26048989 agttttgttttgttctggttatatagggttttgaagctttggagg 26049033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 26120847 - 26120951
Alignment:
Q  386 tacagcggtaacaatctttgatatgcttagagaatgagggttgttcttcatcaagggtccttctctttctctacgctcaatcattgtatacaccaccacc 485  Q
    ||||| |||| | ||| ||||| ||| |||||| | ||| ||||| | ||| |||||||||||| ||||| | ||| ||||||||| |||||||||||||    
T  26120847 tacagtggtagcgatccttgatttgcgtagagattaaggattgttttgcattaagggtccttctatttctttgcgcccaatcattgaatacaccaccacc 26120946  T
Q  486 tcaaa 490  Q
    |||||    
T  26120947 tcaaa 26120951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Complemental strand, 26056653 - 26056610
Alignment:
Q  306 attgaggtaatggattgagaagcaaagaagtcattaggaaaaaa 349  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||    
T  26056653 attgaggtaatagattgagaaacaaagatgtcattaggaaaaaa 26056610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 26037997 - 26038046
Alignment:
Q  54 tatatgactatcaaattctgaaattttgagacaactaaaatcagtaagat 103  Q
    ||||||||||||||||||| ||||||| || |||| ||||||| ||||||    
T  26037997 tatatgactatcaaattctaaaattttcagtcaacgaaaatcattaagat 26038046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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