View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_7 (Length: 562)
Name: NF13059_low_7
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Original strand, 2899266 - 2899800
Alignment:
| Q |
19 |
tatatcttatagctggccacgatctaatgaacaattaaagacacataactttgactcaagtatgagtttgcattggccaaaaccgattactcatgaccct |
118 |
Q |
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| T |
2899266 |
tatatcttatagctggccacgatctaatgaacaattaaagacacataactttgactcaagtatgagtttgcattggccaaaaccgattactcatgaccct |
2899365 |
T |
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| Q |
119 |
agtcctgaaactaaaccaatgccctctaaacatggatttgattaatttaaactgcaaaaattaatcaattgatatatgaaaaattcatttaagggggttg |
218 |
Q |
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| T |
2899366 |
agtcctgaaactaaaccaatgccctctaaacatggatttgattaatttaaactgcaaaaattaatcaattgatatatgaaaaattcatttaagggggttg |
2899465 |
T |
|
| Q |
219 |
acacctttcaatatcctaagttttttcatacatacaagttgaagaacaaactttaaaccaaatgattaagagatttaaatatctataacctatttcacac |
318 |
Q |
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| T |
2899466 |
acacctttcaatatcctaagttttttcatacatacaagttgaagaacaaactttaaaccaaatgattaagagatttaagtatctataacctatttcacac |
2899565 |
T |
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| Q |
319 |
catgattgtaaagtggattcattttaaagtataaagttatcattatcattggttaaaaaataaagagttgatattttcttacataccaaccagagatcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2899566 |
catgattgtaaagtggattcattttaaagtataaagttatcattatcattggttaaaaaataaagagtcgatattttcttacataccaaccagagatcaa |
2899665 |
T |
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| Q |
419 |
actcttaaccaaatggttacgagacccaagtatttataacttgtgtcacaccatatcggctaaatgggttcattttaaagtcgaaagttatcgctatcaa |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
2899666 |
actcttaaccaaatggttacgagacccaagtatttataacttgtgtcacaccatatcggttaaatgggttcattttaaagttgaaagttatcgctatcaa |
2899765 |
T |
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| Q |
519 |
ttattgattaacaaataaaaatttactagtattat |
553 |
Q |
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| T |
2899766 |
ttattgattaacaaataaaaagttactagtattat |
2899800 |
T |
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