View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13059_low_8 (Length: 553)
Name: NF13059_low_8
Description: NF13059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13059_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 136 - 534
Target Start/End: Complemental strand, 46185190 - 46184784
Alignment:
| Q |
136 |
cccggttgaatataaatatatgatagtataagctagtgaaccaacc--------gaaccggtttggttcaatcaagcaccaggagctgcatccttaacct |
227 |
Q |
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| T |
46185190 |
cccggttgaatataaatatatgatagtataagctagtgaaccaaccaaccaaccgaaccggtttggttcaatcaagcaccaggagctgcatccttaacct |
46185091 |
T |
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| Q |
228 |
tactctgcaaataaccaccatattctcttgcataatctttaacatgagaagcagtatcataaaggcggttccttgcataatcaacccggtccgaaccggg |
327 |
Q |
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| T |
46185090 |
tactctgcaaataaccaccatattctcttgcataatctttaacatgagaagcagtatcataaaggcggttccttgcataatcaacccggtccgaaccggg |
46184991 |
T |
|
| Q |
328 |
aggatgaagacctctaaagtaacggtagaaccaagaggaagcagctacagcaacaacaccaaatccacacatggacaagaatccagctgcaaggaggaag |
427 |
Q |
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| T |
46184990 |
aggatgaagacctctaaagtaacgatagaaccaagaggaagcagctacagcaacaacaccaaatccacacatggacaagaatccagcagcaaggaggaag |
46184891 |
T |
|
| Q |
428 |
agaaaggtaccagctgggacccatattgggcttgaaacgatgatcaatggggagaagaagatgagggagacgacggtggcggcgacagttagaccggtaa |
527 |
Q |
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| T |
46184890 |
agaaaggtaccagctgggacccatattgggcttgaaacgatgatcaatggggagaagaagatgagggagacgacggtggcggcgacagttagaccggtaa |
46184791 |
T |
|
| Q |
528 |
ggaggag |
534 |
Q |
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| T |
46184790 |
ggaggag |
46184784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 46185335 - 46185227
Alignment:
| Q |
6 |
agcagcacagaccaaaaaagtaacaaaagaatataaagatgacataacttaattccactaacaattatgattacgtacacacaccttaacttaattttga |
105 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46185335 |
agcatcacacaccaaaaaagtaacaaaagaatataaagatgacataacttaattccactaacaattatgattacgtacacacaccttaacttaatattga |
46185236 |
T |
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| Q |
106 |
accatacat |
114 |
Q |
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||||||||| |
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| T |
46185235 |
accatacat |
46185227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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