View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_high_10 (Length: 629)

Name: NF1305_high_10
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_high_10
NF1305_high_10
[»] chr1 (1 HSPs)
chr1 (57-600)||(31442635-31443178)
[»] scaffold0064 (1 HSPs)
scaffold0064 (168-507)||(24161-24494)
[»] chr7 (22 HSPs)
chr7 (194-469)||(13887889-13888170)
chr7 (177-296)||(7310973-7311092)
chr7 (177-296)||(7328366-7328485)
chr7 (391-493)||(35205922-35206024)
chr7 (168-293)||(35205655-35205780)
chr7 (184-296)||(20415058-20415170)
chr7 (205-296)||(7306449-7306540)
chr7 (391-485)||(21210479-21210573)
chr7 (402-468)||(20414877-20414943)
chr7 (427-483)||(7328158-7328214)
chr7 (184-296)||(20456681-20456793)
chr7 (421-468)||(20456500-20456547)
chr7 (394-493)||(21218709-21218808)
chr7 (175-261)||(21218472-21218558)
chr7 (391-470)||(29921991-29922070)
chr7 (388-462)||(660842-660916)
chr7 (430-464)||(7311247-7311281)
chr7 (391-469)||(36260247-36260325)
chr7 (421-494)||(9807793-9807866)
chr7 (397-470)||(22028621-22028694)
chr7 (263-299)||(20352274-20352310)
chr7 (393-469)||(36263047-36263123)
[»] chr5 (5 HSPs)
chr5 (175-261)||(42298331-42298417)
chr5 (11-53)||(33337547-33337589)
chr5 (391-468)||(28763903-28763980)
chr5 (391-464)||(42298110-42298183)
chr5 (264-296)||(18964671-18964703)
[»] chr4 (7 HSPs)
chr4 (175-296)||(2911254-2911375)
chr4 (390-470)||(3560955-3561035)
chr4 (397-463)||(53790553-53790619)
chr4 (390-469)||(3565738-3565817)
chr4 (391-481)||(53774822-53774912)
chr4 (390-470)||(3557719-3557799)
chr4 (391-463)||(35767018-35767090)
[»] scaffold0128 (2 HSPs)
scaffold0128 (391-491)||(4109-4209)
scaffold0128 (175-261)||(4357-4443)
[»] chr2 (4 HSPs)
chr2 (402-520)||(43001448-43001566)
chr2 (176-221)||(20712292-20712337)
chr2 (397-470)||(18908813-18908886)
chr2 (397-470)||(18920769-18920842)
[»] scaffold0097 (1 HSPs)
scaffold0097 (176-221)||(16131-16176)
[»] chr6 (1 HSPs)
chr6 (264-294)||(17369860-17369890)


Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 57 - 600
Target Start/End: Original strand, 31442635 - 31443178
Alignment:
Q  57 gaagaatatgcttaaaatatacttacataaatgagtactagacaagaaattcaagacaggcagttgattcattgtatctataacaaagttttgaaataaa 156  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31442635 gaagaatatgcttaaaatatacttacatgaatgagtaatagacaagaaattcaagacaggcagttgattcattgtatctataacaaagttttgaagtaaa 31442734  T
Q  157 agaaataatggctagagcagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctag 256  Q
     |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31442735 ggaaaaaatggctagagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctag 31442834  T
Q  257 ttttcactactctattatttctccaattatagagaattgcccgttctttctggtcatctacaaatacgagtgtatcaccattcacataaagattgaacat 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31442835 ttttcactactctattatttctccaattatagagaattgcccgttctttctggtcatctacaaatacgagtgtatcaccattcacataaagattgaacat 31442934  T
Q  357 tgagataccaggtttcaagttcatcttaagcttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatata 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31442935 tgagataccaggtttcaagttcatcttaagcttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatata 31443034  T
Q  457 acaaaatcggtttcattcaaatcatgatagaaacaaagtgaatccattaacatagaaacacctggctttgcatgtgacaccttctgtaaaacatgtgaca 556  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31443035 acgaaatcggtttcattcaaatcatgatagaaacaaagtgaatccattaacatagaaacacctggctttgcatgtgacaccttctgtaaaacatgtgaca 31443134  T
Q  557 agtccagagaaattggaggtggcagaaattgtgtgtatgtctct 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  31443135 agtccagagaaattggaggtggcagaaattgtgtgtatgtctct 31443178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 91; Significance: 9e-44; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 168 - 507
Target Start/End: Complemental strand, 24494 - 24161
Alignment:
Q  168 ctagagcagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactact 267  Q
    |||||| |||||||||| |||||  |||| ||||| |||||| ||||||| |||||||||  |||||||||||||||||||||| |||||||||||||||    
T  24494 ctagagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactact 24395  T
Q  268 ctattatttctccaattatagagaattgcccgttctttctggtcatctacaaatacgagtgtatcaccattcacataaagattgaacattgagat-acca 366  Q
    ||||||||| ||||||||||||||||||| || | ||  ||||  |     ||||| | ||||||||||||| ||||       || |||||||| ||||    
T  24394 ctattatttatccaattatagagaattgctcggttttgttggttgtgagtgaataccattgtatcaccattctcata-------aatattgagatgacca 24302  T
Q  367 ggtttcaagttcatcttaagcttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcgg 466  Q
     |||| | |||||| | ||| |  |||||||||| |||||| |||||||  || ||||||||||||||| ||| |||||||||||||||||||||| | |    
T  24301 cgtttaatgttcatttgaagatcgtgatagctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataacaaaaccag 24202  T
Q  467 tttcattcaaatcatgatagaaacaaagtgaatccattaac 507  Q
    || |    || |||||||| |||||||| |||| |||||||    
T  24201 ttcccccgaattcatgataaaaacaaagggaattcattaac 24161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 4e-43; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 194 - 469
Target Start/End: Original strand, 13887889 - 13888170
Alignment:
Q  194 ttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaact---ctagttttcactactctattatttctccaattatagag 290  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| | |||||  |||   ||||||||| |||| | ||||||||||||||| ||||     
T  13887889 ttgaaaccaagctttcgacataattgtttatagagaaccaacgtatttctttgtgtactgatctagttttcgctacccgattatttctccaattgtagaa 13887988  T
Q  291 aattgcccgttctttctggtcatc---tacaaatacgagtgtatcaccattcacataaagattgaacattgagataccaggtttcaagttcatcttaagc 387  Q
    |||||| || | |||| |||| ||   | | ||||| | |||| || ||||| ||||||| |||||    |||| ||||||||| |||||||||||||      
T  13887989 aattgctcggtttttcaggtcgtcgtgtgcgaataccaatgtaccatcattctcataaaggttgaaacacgagaaaccaggtttgaagttcatcttaaaa 13888088  T
Q  388 ttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 469  Q
    ||  ||||||||| |||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  13888089 ttgcgatagctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttt 13888170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 177 - 296
Target Start/End: Original strand, 7310973 - 7311092
Alignment:
Q  177 aacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattattt 276  Q
    |||||||||||||   ||||||||||  |||||||||||||  || |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||    
T  7310973 aacttactttcaataggttgaaaccagactttcgacataatccttgatagagaaccaacatatctttttgttaactctagatttcagtactctattagtt 7311072  T
Q  277 ctccaattatagagaattgc 296  Q
    ||| | ||||| ||||||||    
T  7311073 ctcaagttatacagaattgc 7311092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 177 - 296
Target Start/End: Complemental strand, 7328485 - 7328366
Alignment:
Q  177 aacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattattt 276  Q
    |||||||||||| |  ||||||||||  |||||||||||||  || |||||| ||||||||||||||||||||||||||| || || |||||||||| ||    
T  7328485 aacttactttcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtactctattagtt 7328386  T
Q  277 ctccaattatagagaattgc 296  Q
    ||| | ||||||||||||||    
T  7328385 ctcaagttatagagaattgc 7328366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 391 - 493
Target Start/End: Original strand, 35205922 - 35206024
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaac 490  Q
    |||||||||| |||||| ||||||| ||| ||||| |||| |||||||| |||||||||||||||||||||||| ||| |||| ||||||||||| ||||    
T  35205922 tgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaaaac 35206021  T
Q  491 aaa 493  Q
    |||    
T  35206022 aaa 35206024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 293
Target Start/End: Original strand, 35205655 - 35205780
Alignment:
Q  168 ctagagcagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactact 267  Q
    |||||| | ||||||| ||||||| |||||||||| ||||||||||||||  || |||| ||||||||||||||| ||||||| |  || ||||| ||||    
T  35205655 ctagagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtact 35205754  T
Q  268 ctattatttctccaattatagagaat 293  Q
    |||||  ||||||| |||||||||||    
T  35205755 ctattggttctccagttatagagaat 35205780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 20415170 - 20415058
Alignment:
Q  184 tttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattatttctccaat 283  Q
    |||||||  ||||||||||  ||||| ||||||  ||| ||||||||||||||| | || ||||||||||| | ||||| |||| |||||||||||||||    
T  20415170 tttcaacaagttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaat 20415071  T
Q  284 tatagagaattgc 296  Q
    |||||||||||||    
T  20415070 tatagagaattgc 20415058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 7306449 - 7306540
Alignment:
Q  205 ctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattatttctccaattatagagaattgc 296  Q
    |||||||||||||  || |||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||| | ||||| ||||||||    
T  7306449 ctttcgacataatccttgatagagaaccaacatatctttttgttgactctagatttcagtactctattagttctcaagttatacagaattgc 7306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 391 - 485
Target Start/End: Original strand, 21210479 - 21210573
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgata 485  Q
    |||||||||| |||||| ||| ||| ||| ||||| ||||||||||| |||||||||||||||||||||||||| ||| | || |||||||||||    
T  21210479 tgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttgaaatcatgata 21210573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 402 - 468
Target Start/End: Complemental strand, 20414943 - 20414877
Alignment:
Q  402 tttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtt 468  Q
    |||||| ||||||| ||| ||||| ||||||||||||||  ||||||||||||||| ||||||||||    
T  20414943 tttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataataaaatcggtt 20414877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 483
Target Start/End: Complemental strand, 7328214 - 7328158
Alignment:
Q  427 tcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatga 483  Q
    ||||||||||||| |||||||||||||||||||||||| ||||  || |||||||||    
T  7328214 tcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga 7328158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 296
Target Start/End: Complemental strand, 20456793 - 20456681
Alignment:
Q  184 tttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattatttctccaat 283  Q
    |||||||  ||||||||||| ||||| ||||||   || ||||||||||  | |  ||| || |||||| ||| ||||| |||| |||||||||||||||    
T  20456793 tttcaacaagttgaaaccaaactttcaacataacccttgatagagaacccgcttcccttatttttaactttaggtttcaatactatattatttctccaat 20456694  T
Q  284 tatagagaattgc 296  Q
    |||||||||||||    
T  20456693 tatagagaattgc 20456681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 421 - 468
Target Start/End: Complemental strand, 20456547 - 20456500
Alignment:
Q  421 gacttttcatctccaaattttgtcatcttccatataacaaaatcggtt 468  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  20456547 gacttgtcatccccaaattttgtcatcttccatataacaaaattggtt 20456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 21218709 - 21218808
Alignment:
Q  394 tagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaacaaa 493  Q
    ||||||| ||| || ||||||| ||| ||||| |||||||||||||  ||||| | ||||||||| ||||| ||| |||| ||||| ||||| |||||||    
T  21218709 tagctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaaatcgtgataaaaacaaa 21218808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 21218472 - 21218558
Alignment:
Q  175 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttc 261  Q
    |||||||||||||||   |||||||||||||||||||||||||  |  |  ||| |||||| |||||||||||||| ||||| ||||    
T  21218472 agaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctagctttc 21218558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 470
Target Start/End: Original strand, 29921991 - 29922070
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 470  Q
    ||||| |||||| |||| ||||||| ||| || | |||||| ||||||||  |||||| ||||||||||||||| |||||    
T  29921991 tgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttc 29922070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 660842 - 660916
Alignment:
Q  388 ttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaa 462  Q
    |||||||| ||||||||||| ||||||| ||| |||| |||| ||| |||||   |||||| |||||||||||||    
T  660842 ttatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 464
Target Start/End: Original strand, 7311247 - 7311281
Alignment:
Q  430 tctccaaattttgtcatcttccatataacaaaatc 464  Q
    |||||||||| ||||||||||||||||||||||||    
T  7311247 tctccaaattctgtcatcttccatataacaaaatc 7311281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 36260325 - 36260247
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 469  Q
    ||||||||||||||||  | ||||  ||| |||| |||| ||||||||| |  ||||||||||||||||||||| ||||    
T  36260325 tgatagctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36260247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 494
Target Start/End: Complemental strand, 9807866 - 9807793
Alignment:
Q  421 gacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaacaaag 494  Q
    |||| |||| |||||||||   |||||| ||||||||| ||||||||||  |||||||||||| | ||||||||    
T  9807866 gactcttcaactccaaattccttcatctgccatataacgaaatcggttttcttcaaatcatgacaaaaacaaag 9807793  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 470
Target Start/End: Complemental strand, 22028694 - 22028621
Alignment:
Q  397 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 470  Q
    ||||| ||||||||||||| ||| |||| |||| ||||| | |  ||||| |||||||||||||||| ||||||    
T  22028694 ctaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttc 22028621  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 299
Target Start/End: Complemental strand, 20352310 - 20352274
Alignment:
Q  263 ctactctattatttctccaattatagagaattgcccg 299  Q
    |||||||||||| | ||||||||||||||||||||||    
T  20352310 ctactctattatatatccaattatagagaattgcccg 20352274  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 469
Target Start/End: Complemental strand, 36263123 - 36263047
Alignment:
Q  393 atagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 469  Q
    |||||||| |||||  | ||||| ||| |||| |||| ||||||||| |  ||||||||||||||||||||| ||||    
T  36263123 atagctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36263047  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 42298417 - 42298331
Alignment:
Q  175 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttc 261  Q
    |||||||||||||||   |||||||||||||||||||||||||  || || ||| |||||||||||||| ||||||  |||||||||    
T  42298417 agaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaatcctagttttc 42298331  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 33337589 - 33337547
Alignment:
Q  11 cacagagacgaacaaaaacactgttaagagtcccacatcggat 53  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  33337589 cacacagacgaacaaaaacactgttaagagtcccacatcggat 33337547  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 28763903 - 28763980
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtt 468  Q
    |||||||| ||||| || ||| ||  ||| ||||||||| |||||||||  |||||||||||||||||||||| ||||    
T  28763903 tgatagctgattttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 391 - 464
Target Start/End: Complemental strand, 42298183 - 42298110
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatc 464  Q
    |||||||||| |||  | ||||||| ||| || |||||||||||||||| | |||||||||||||||| |||||    
T  42298183 tgatagctaactttgtggaattgagtccaagaattttcatctccaaattctatcatcttccatataactaaatc 42298110  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 296
Target Start/End: Original strand, 18964671 - 18964703
Alignment:
Q  264 tactctattatttctccaattatagagaattgc 296  Q
    ||||||||||| |||||||||||||||||||||    
T  18964671 tactctattatctctccaattatagagaattgc 18964703  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 175 - 296
Target Start/End: Complemental strand, 2911375 - 2911254
Alignment:
Q  175 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattat 274  Q
    |||||||||||||||   ||||| ||||||||||| ||||||| ||| ||||| ||||||| |||| | |||| || ||||||||||  | |||| |||     
T  2911375 agaacttactttcaagaagttgataccaagctttctacataatcgttcatagaaaaccaacgtatcctgttgtcaattctagttttctttgctctgttag 2911276  T
Q  275 ttctccaattatagagaattgc 296  Q
    ||||||  ||||||||||||||    
T  2911275 ttctccggttatagagaattgc 2911254  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 470
Target Start/End: Original strand, 3560955 - 3561035
Alignment:
Q  390 atgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 470  Q
    |||||| ||||||||||| ||||||| ||| |||| |||| | ||||||||| |||||| ||| |||| ||||||||||||    
T  3560955 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttc 3561035  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 463
Target Start/End: Complemental strand, 53790619 - 53790553
Alignment:
Q  397 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaat 463  Q
    ||||||||||| ||||||| ||| || | ||||  |||||||||||||||||||||||||| |||||    
T  53790619 ctaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaat 53790553  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 469
Target Start/End: Complemental strand, 3565817 - 3565738
Alignment:
Q  390 atgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 469  Q
    |||||| ||||||||||| ||||||| ||| |||| |||| | |||||||   |||||| |||||||| |||||||||||    
T  3565817 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttt 3565738  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 53774912 - 53774822
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcat 481  Q
    ||||| ||||||||||| ||||||| ||| |||| |||| |||||||||   |||| | ||||||||||||||  ||||| || |||||||    
T  53774912 tgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcat 53774822  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 470
Target Start/End: Complemental strand, 3557799 - 3557719
Alignment:
Q  390 atgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 470  Q
    |||||| ||||||||||| ||||||| ||| |||| |||| | |||||||   |||| | |||||||| ||||||||||||    
T  3557799 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttc 3557719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 35767090 - 35767018
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaat 463  Q
    |||||| |||||||||| | ||||  ||| |||| |||| ||||||||| |  ||||||||||||||||||||    
T  35767090 tgatagttaattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaat 35767018  T

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Target: scaffold0128 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 4209 - 4109
Alignment:
Q  391 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaac 490  Q
    |||||||||| |||  | ||||||| ||| || ||||||| |||||||| |||||||||||||||||| |||||||| |  || ||||||||||| ||||    
T  4209 tgatagctaactttgtggaattgagtccaagaattttcatttccaaattctgtcatcttccatataaccaaatcggtcttcttgaaatcatgatacaaac 4110  T
Q  491 a 491  Q
    |    
T  4109 a 4109  T

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Target: scaffold0128; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 4443 - 4357
Alignment:
Q  175 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttc 261  Q
    |||||||||||||||   |||||||||||||||||||||||||  || || | |||||||| |||||||||||| | | ||||||||    
T  4443 agaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgggaaccaacgtatctttttgttgaatgtagttttc 4357  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 402 - 520
Target Start/End: Original strand, 43001448 - 43001566
Alignment:
Q  402 tttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaacaaagtgaatcc 501  Q
    |||| |||||||||  || ||||||| || |||||||| | |||||||||||||||||||| | ||| | |  ||||||||||| ||||||||||||| |    
T  43001448 tttatgtaattgagttcaagactttttatatccaaattatatcatcttccatataacaaaaccagttccctcgaaatcatgataaaaacaaagtgaattc 43001547  T
Q  502 attaacatagaaacacctg 520  Q
    || |||  | |||||||||    
T  43001548 atcaactcacaaacacctg 43001566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 20712292 - 20712337
Alignment:
Q  176 gaacttactttcaacttgttgaaaccaagctttcgacataatggtt 221  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  20712292 gaacttactttcaacaagttgaaaccaagctttcgacataatggtt 20712337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 18908813 - 18908886
Alignment:
Q  397 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 470  Q
    |||||||| || ||||||| ||| |||| || | |||||||||   ||||||||||||||||||||| ||||||    
T  18908813 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18908886  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 470
Target Start/End: Original strand, 18920769 - 18920842
Alignment:
Q  397 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 470  Q
    |||||||| || ||||||| ||| |||| || | |||||||||   ||||||||||||||||||||| ||||||    
T  18920769 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18920842  T

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Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 16131 - 16176
Alignment:
Q  176 gaacttactttcaacttgttgaaaccaagctttcgacataatggtt 221  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  16131 gaacttactttcaacaagttgaaaccaagctttcgacataatggtt 16176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 264 - 294
Target Start/End: Complemental strand, 17369890 - 17369860
Alignment:
Q  264 tactctattatttctccaattatagagaatt 294  Q
    |||||||||||||||||||||||||||||||    
T  17369890 tactctattatttctccaattatagagaatt 17369860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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