View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_11 (Length: 623)
Name: NF1305_high_11
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 9 - 594
Target Start/End: Complemental strand, 40114242 - 40113657
Alignment:
| Q |
9 |
agcaaagggtatattatatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcct |
108 |
Q |
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| T |
40114242 |
agcaaaaggtatattatatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcct |
40114143 |
T |
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| Q |
109 |
caggtatatatgctttggattcttttatagtatttttgtgtttaccttatagacaaaatacaattttttggaagattctgcattatatgtgatggaccaa |
208 |
Q |
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| T |
40114142 |
caggtatatatgctttggattcttttatagtatttttgtgtttaccttatagacaaaatacaattttttggaagattctgcattatatgtgatggaccaa |
40114043 |
T |
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| Q |
209 |
atctttctttcaacatcacctttcttgtctcgtgatccttttttgttttgttacatgttatgtattgttccatttcaacatgtttacaaaacttttagtg |
308 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40114042 |
atctctctttcaacatcacctttcttgtctcgtgatccttttttgttttgttacatgttatgtattgttccatttcaacatgtttacaaaacttttagtg |
40113943 |
T |
|
| Q |
309 |
ccacatttaatannnnnnnngggcgcagatttgtgattttggcctagcaaaatggttgccagagaattggactcaccataacgtttcaaaatttgaagga |
408 |
Q |
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| T |
40113942 |
ccacatttaatattttttttgggcgcagatttgtgattttggcctagcaaaatggttgccagagaattggactcaccataacgtttcaaaatttgaagga |
40113843 |
T |
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| Q |
409 |
acttttgggtttgtaacattcaaattaattgttactgtactttctgtaatggtaaaattaagtattaaataaatattaattaactcatcaagttcaattt |
508 |
Q |
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| T |
40113842 |
acttttgggtttgtaacattcaaattaattgttactgtactttctgtaatggtaaaattaagtattaaattaatattaattaactcatcaagttcaattt |
40113743 |
T |
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| Q |
509 |
atgatgactttccacagctaccttgctccagaatacttacttcatggcatagtagatgagaaaacagatgtatttgcatttggtgt |
594 |
Q |
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| T |
40113742 |
atgatgactttccacagctaccttgctccagaatacttacttcatggcatagtagatgagaaaacagatgtatttgcatttggtgt |
40113657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 6987932 - 6987844
Alignment:
| Q |
25 |
tatcttcatgagggttgtcaaaaaagatttatccacagagatataaaagctgcaaatatcttgctcacagaggactttgagcctcaggt |
113 |
Q |
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||||| |||||||| ||||||| ||| |||| |||| |||||| |||||| | ||||| | ||| |||||||||||||||||||||| |
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| T |
6987932 |
tatctgcatgagggatgtcaaagaaggattattcacaaagatatcaaagcttctaatatacttctctcagaggactttgagcctcaggt |
6987844 |
T |
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