View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_13 (Length: 604)
Name: NF1305_high_13
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 29 - 487
Target Start/End: Original strand, 23028701 - 23029163
Alignment:
| Q |
29 |
aataattgtgtagctgaaatcagtgagaatacacatttcttcattgttattcgtttagtgattgtataggaaactctacagagaacgcacatgagttaat |
128 |
Q |
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| T |
23028701 |
aataattgtgtagctgaaatcagtgagaatacacatttcttcattgttattcgtttagtgattgtataggaaactctacagagaacgcacatgagttaat |
23028800 |
T |
|
| Q |
129 |
tgagaaacacgttttcacacatttacaaatatggatgatgaattggaaaagcagttacatacgtatggccataccaaaaggcagagtcaaatatagagtg |
228 |
Q |
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| T |
23028801 |
tgagaaacacgttttcacacatttacaaatatggatgatgaattggaaaagcagttacatacgtatggccataccaaaaggcagagtcaaaaatagagtg |
23028900 |
T |
|
| Q |
229 |
agaaatattaggaaataacaaaataaatgtgatttggtattggaaacaaaatgaatgatatttacaaagtccaaaaatgatatcaccgtccatgaattat |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23028901 |
agaaatattaggaaataacaaaataaatgtgatttggtattgggaacaaaatgaatgatatttacaaagtccaaaaatgttatcaccgtccatgaattat |
23029000 |
T |
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| Q |
329 |
ggggcctcttaatttcattctttgataatgacattcatttggaaattgggattgagcaaccataggttaaatactccatcatctctaacccctccttcac |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23029001 |
ggggcctcttaatttcattctttgataatgacattcatttggaaattgggattgagcaaccataggttaaatactccatcatctctaacccctccttcac |
23029100 |
T |
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| Q |
429 |
aaaatctt----tctctcacacacattattcaaatatacatcgatttataaacctttcctcca |
487 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23029101 |
aaaatctttctctctctctcacacattattcaaatatacatcgatttataaacctctcctcca |
23029163 |
T |
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