View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_18 (Length: 571)
Name: NF1305_high_18
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 50733661 - 50733989
Alignment:
| Q |
1 |
aataaagcagattaggattattctctttggtatgtttgcaacatttattggcacatcaataatagtatactaacttagatagtcaaatatatcaaacaaa |
100 |
Q |
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| T |
50733661 |
aataaagcagattaggattattctctttgttatgtttgcaacatttattggcacatcaataatagtatactaacttagatagtcatatatatcaaacaaa |
50733760 |
T |
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| Q |
101 |
catatattatatacttcattgtccaaagatgaaaagaaaatataaaccttgattccaagagtatgggttaaattttagtccttcaccatttttgttgact |
200 |
Q |
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| T |
50733761 |
catatattatatacttcattgtccaaagatgaaaagaaaatataaaccttgactccaagagtatgggttaaattttagtccttcaccatttttgttgact |
50733860 |
T |
|
| Q |
201 |
aaaagaggtcctatctcaacaacagcaccacctccaattgaggagcatccaggtcctgactcaaaggcaaaatgacaaaaatgaaaagtagcatcactaa |
300 |
Q |
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| T |
50733861 |
aaaagaggtcctatctcaacaacagcaccacctccaattgaggagcatccaggtcctgactcaaaggcaaaatgacaaaaatgaaaagtagcatcactaa |
50733960 |
T |
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| Q |
301 |
ataaatatgactagaactctataaccata |
329 |
Q |
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| T |
50733961 |
ataaatatgactagaactctataaccata |
50733989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 50725508 - 50725821
Alignment:
| Q |
1 |
aataaagcagattaggattattctctttggtatgtttgcaacatttattggcacatcaataatagtatactaacttagatagtcaaatatatc--aaaca |
98 |
Q |
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| T |
50725508 |
aataaagcaaattaggattattcttcttgttatgtttgcaacatttattggcacaacaatagtagtatacaaacttagatagtgaaatatatattaaaca |
50725607 |
T |
|
| Q |
99 |
aacatatattatatacttcattgtccaaagatgaaaagaaaatataaaccttgattccaagagtatgggttaaattttagtccttcaccatttttgttga |
198 |
Q |
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| T |
50725608 |
aacatataatatatacttcattgtcgaaagatgaaaagaaaatataaaccttgattccaagagtatgggttgaattttagtccttcaccattttggttga |
50725707 |
T |
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| Q |
199 |
ctaaaagaggtcctatctcaacaacagcaccacctccaattgaggagcatccaggtcctgactcaaaggcaaaatgacaaaaatgaaaagtagcatcact |
298 |
Q |
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| T |
50725708 |
ctaaaagaggtcctatctcaacaacagcaccatatccaattgaggagcatccaggtcctaattcaaagacaacattac-aaaatgaaatgtagcatcaga |
50725806 |
T |
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| Q |
299 |
aaataaatatgacta |
313 |
Q |
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| T |
50725807 |
aaataaatatgacta |
50725821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 359 - 542
Target Start/End: Original strand, 50734033 - 50734216
Alignment:
| Q |
359 |
taataataataattagttacaaaaatgaaatgatgaaagacctccattgagccagagaaggagaggtttattggagggttgagattgagcttcaaagaac |
458 |
Q |
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| T |
50734033 |
taataataataattagttacaaaaatgaaatgatgaaagacctccattgagccagagaaggagaggtttattggagggttgagattgagcttcaaagaac |
50734132 |
T |
|
| Q |
459 |
caatagaaaagagctctcccatgttcttcattgacattgatgtaacctgaaaagtgtgaaattgatggatttgaaggttgtcct |
542 |
Q |
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| T |
50734133 |
caatagaaaagagccctcccatgttcttcattgacattgatgtaacctgaaaagtgtgaaattgatgggtttgaaggttgtcct |
50734216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 379 - 542
Target Start/End: Original strand, 50726039 - 50726202
Alignment:
| Q |
379 |
aaaaatgaaatgatgaaagacctccattgagccagagaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagctctccc |
478 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50726039 |
aaaaatgaaatgatgaaagacctccattgagccaaagaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctccc |
50726138 |
T |
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| Q |
479 |
atgttcttcattgacattgatgtaacctgaaaagtgtgaaattgatggatttgaaggttgtcct |
542 |
Q |
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| T |
50726139 |
atgttcttcattgacattgatgtaacctgaaaagtgtgaaattgatgggtttgaaggttgtcct |
50726202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 414 - 542
Target Start/End: Original strand, 50737184 - 50737312
Alignment:
| Q |
414 |
agaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagctctcccatgttcttcattgacattgatgtaacctgaaaagt |
513 |
Q |
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| T |
50737184 |
agaaggagaggtttattggagggttgagattgagcttcaaagaaccaatagaaaagagccctcccatgatcttcattgacattgatgtaacctgaaaagt |
50737283 |
T |
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| Q |
514 |
gtgaaattgatggatttgaaggttgtcct |
542 |
Q |
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||||||||| ||| |||||||||||||| |
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| T |
50737284 |
gtgaaattggtggtgttgaaggttgtcct |
50737312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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