View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_high_33 (Length: 435)
Name: NF1305_high_33
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 47 - 407
Target Start/End: Complemental strand, 54984175 - 54983812
Alignment:
| Q |
47 |
tctggaaaattccattgctcattatctgtgtgtatcacattcaatttcaacatgttgtatcaatcctatcgtttttcaggtatatataggaaattgataa |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
54984175 |
tctggaaaattccattgctcattatctgtgtgtatcacattcaatttcaacatgttgtatcaatcctatcgtttttcaggtatatacaggaaattgataa |
54984076 |
T |
|
| Q |
147 |
agaaatgcataataagaaattttatctttaaaatacaatttgagttannnnnnncttgatgaaattaaattagcccatccaaagtaggatcgagagaata |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
54984075 |
agaaatgcataataagaaattttatctttaaaatacaatttgagttatttttttcttgatgaaattaaattagcccatccaaagtagaatcgagagaata |
54983976 |
T |
|
| Q |
247 |
aaatttgagacattgaagaagagctcactccaaaccactaggattacatca---ttttatagttatattctatagttggtttaacaatgcctttataaca |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
54983975 |
aaatttgagacattgaagaagagctcactccaaactactaggattacatcatttttttatagttatattctatagttgttttaacactgcctttataaca |
54983876 |
T |
|
| Q |
344 |
ctcgtaaaccggtccagatcttggattcttttggtatttagattttaccacacttaagagtatt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54983875 |
ctcgtaaaccggtccagatcttggattcttttggtatttagattttaccacacttaagagtatt |
54983812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 54963398 - 54963331
Alignment:
| Q |
47 |
tctggaaaattccattgctcattatctgtgtgtatcacattcaatttcaacatgttgtatcaatcctatc |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| || ||||||| ||||| ||||||||||| |
|
|
| T |
54963398 |
tctggaaaattccattgctcattatct--gtgtaacacatttaagttcaacaggttgtgtcaatcctatc |
54963331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 31326526 - 31326590
Alignment:
| Q |
47 |
tctggaaaattccattgctcattatctgtgtgtatcacattcaatttcaacatgttgtatcaatcct |
113 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| || |||||||||||||||| ||||| |||||||| |
|
|
| T |
31326526 |
tctgaaaaatcccattgctcattatctgtgt--attacattcaatttcaacaggttgtgtcaatcct |
31326590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University