View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_36 (Length: 409)
Name: NF1305_high_36
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 227 - 403
Target Start/End: Complemental strand, 30186101 - 30185925
Alignment:
| Q |
227 |
cagttcaaaatttgcattttactgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacgccagtcccaaggcacacatact |
326 |
Q |
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| T |
30186101 |
cagttcaaaatttgcgttttattgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacaccagtcccaaggcacacatact |
30186002 |
T |
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| Q |
327 |
aaggagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagtttagaattatcta |
403 |
Q |
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| T |
30186001 |
aaggagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagtttagaattttcta |
30185925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 30186302 - 30186138
Alignment:
| Q |
28 |
cacttacatgattagaggtaagaagtgtagaaatggtagccaattttgaaagtgagaatagcatgataacaagaatatcttcatttgaagaatttgatat |
127 |
Q |
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| T |
30186302 |
cacttacatgattagaggtaagaagtgtagaaatggtagccagttttgaaagtgagaatagcatgataacaagaatatcttcatttgaagaatttgatat |
30186203 |
T |
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| Q |
128 |
cagatctagacctatctgcatcaaataaatcataacataagaaaactgaaatgcgtgatagtccc |
192 |
Q |
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| T |
30186202 |
cagatctagacctatctgcatcaaataaatcataacataagaaaactgaaatgcgtgatagtccc |
30186138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 230 - 391
Target Start/End: Original strand, 18200723 - 18200883
Alignment:
| Q |
230 |
ttcaaaatttgcattttactgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacgccagtcccaaggcacacatactaag |
329 |
Q |
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| T |
18200723 |
ttcaaaatttgtattttt-tgtgccaaactattgttgtgctagtttacactttgcaccaatattgaatttgaacaccagtcctgagggacacatactaag |
18200821 |
T |
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| Q |
330 |
gagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagtt |
391 |
Q |
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| T |
18200822 |
gagttcatttggtacaaaaatagtttaaactcatcaccattgaactaattttttataaagtt |
18200883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 18200583 - 18200666
Alignment:
| Q |
28 |
cacttacatgattagaggtaagaagtgtagaaatggtagccaa-ttttgaaagtgagaatagcatgataacaagaatatcttca |
110 |
Q |
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| T |
18200583 |
cacttgcatgattggaggaaagaagtgtagaaatggtagccaagttttgaaagtgagaatagcatgataacaagaatatcttca |
18200666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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