View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_high_38 (Length: 406)
Name: NF1305_high_38
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 398
Target Start/End: Original strand, 51962783 - 51963154
Alignment:
| Q |
30 |
aaatatttgtatttgacacaccggccttatgcataaaataataatacaatacatgcatcctagattctttattattaattacaaaaataaaacttgttgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51962783 |
aaatatttgtatttgacacaccggccttatgcataaaataataatacaatacatgcatcctagattctttattattaattacaaaaataaaacttgttgt |
51962882 |
T |
|
| Q |
130 |
atacattagctctgacttcggaggctgct--tgcatgtagatagttttttaattgcatataggtcagctaaatatactctcnnnnnnncccc-ttaacct |
226 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
51962883 |
gtacattagctctgacttcggaggctgctaatgcatgtagatagttttttaattgcatataggtcagctaaatatactctctttttttcccccttaacct |
51962982 |
T |
|
| Q |
227 |
tcatgttctcaattaaagaggtttccataattcagagttcgatcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51962983 |
tcatgttctcaattaaagaggtttccataattcagagtttggtcaaaaaataaatttggattttccgaaacaaattgtgttaaccgaaactcatcaataa |
51963082 |
T |
|
| Q |
327 |
cttgagttcaaccacttgattagcggcatgggttaatattatattcaaaagtttgaaattgatagtataatc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51963083 |
cttgagttcaaccacttgattagcggcatgggttaatattatattcaaaagtttgaaattgatagtataatc |
51963154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University